RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	AEBP2	Q6ZN18	517 aa	Predicted RBP	23.23	■■□□□ 1.31
LRRC28-222	ENST00000561431	CHIC1	Q5VXU3	224 aa		21.71	■■□□□ 1.07
LRRC28-222	ENST00000561431	SENP3	Q9H4L4	574 aa	Predicted RBP	19.82	■□□□□ 0.76
LRRC28-222	ENST00000561431	PHF23	Q9BUL5	403 aa	Predicted RBP	19.54	■□□□□ 0.72
LRRC28-222	ENST00000561431	FOXD1	Q16676	465 aa		18.55	■□□□□ 0.56
LRRC28-222	ENST00000561431	POTED	Q86YR6	584 aa		17.63	■□□□□ 0.41
LRRC28-222	ENST00000561431	MSH5	O43196	834 aa		17.45	■□□□□ 0.38
LRRC28-222	ENST00000561431	PIAS4	Q8N2W9	510 aa	Predicted RBP	17.22	■□□□□ 0.35
LRRC28-222	ENST00000561431	PLPPR3	Q6T4P5	718 aa		17.18	■□□□□ 0.34
LRRC28-222	ENST00000561431	PPP6R1	Q9UPN7	881 aa		17.1	■□□□□ 0.33
LRRC28-222	ENST00000561431	ADRA2B	P18089	450 aa		17.01	■□□□□ 0.31
LRRC28-222	ENST00000561431	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.73	■□□□□ 0.11
LRRC28-222	ENST00000561431	DMRT2	Q9Y5R5	561 aa		15.68	■□□□□ 0.1
LRRC28-222	ENST00000561431	SCAF1	Q9H7N4	1312 aa	Known RBP	15.51	■□□□□ 0.07
LRRC28-222	ENST00000561431	CACNB1	Q02641	598 aa	Predicted RBP	15.17	■□□□□ 0.02
LRRC28-222	ENST00000561431	DCAF8L1	A6NGE4	600 aa		15.03	■□□□□ -0
LRRC28-222	ENST00000561431	PPP4R3CP	Q6ZMV5	832 aa		15.02	■□□□□ -0
LRRC28-222	ENST00000561431	HOXD11	P31277	338 aa	Predicted RBP	14.98	□□□□□ -0.01
LRRC28-222	ENST00000561431	RNF39	Q9H2S5	420 aa		14.88	□□□□□ -0.03
LRRC28-222	ENST00000561431	CNKSR2	Q8WXI2	1034 aa		14.8	□□□□□ -0.04
LRRC28-222	ENST00000561431	RNF216	Q9NWF9	866 aa	Predicted RBP	14.77	□□□□□ -0.05
LRRC28-222	ENST00000561431	C1QBP	Q07021	282 aa	Known RBP	14.63	□□□□□ -0.07
LRRC28-222	ENST00000561431	DNAJC5B	Q9UF47	199 aa		14.51	□□□□□ -0.09
LRRC28-222	ENST00000561431	NCBP3	Q53F19	620 aa	Known RBP	14.31	□□□□□ -0.12
LRRC28-222	ENST00000561431	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.24	□□□□□ -0.13
LRRC28-222	ENST00000561431	NPM3	O75607	178 aa	Known RBP	14.15	□□□□□ -0.14
LRRC28-222	ENST00000561431		U3KPZ7	1027 aa	Predicted RBP	13.94	□□□□□ -0.18
LRRC28-222	ENST00000561431	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.84	□□□□□ -0.19
LRRC28-222	ENST00000561431	DSG3	P32926	999 aa		13.83	□□□□□ -0.2
LRRC28-222	ENST00000561431	CAPN15	O75808	1086 aa		13.8	□□□□□ -0.2
LRRC28-222	ENST00000561431	POTEH	Q6S545	545 aa		13.74	□□□□□ -0.21
LRRC28-222	ENST00000561431	SLC4A2	P04920	1241 aa		13.62	□□□□□ -0.23
LRRC28-222	ENST00000561431	KCNA4	P22459	653 aa		13.59	□□□□□ -0.23
LRRC28-222	ENST00000561431	TRH	P20396	242 aa	Predicted RBP	13.5	□□□□□ -0.25
LRRC28-222	ENST00000561431	ABCB7	O75027	752 aa		13.47	□□□□□ -0.25
LRRC28-222	ENST00000561431	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.46	□□□□□ -0.25
LRRC28-222	ENST00000561431	APLP2	Q06481	763 aa		13.45	□□□□□ -0.26
LRRC28-222	ENST00000561431	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.38	□□□□□ -0.27
LRRC28-222	ENST00000561431	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.38	□□□□□ -0.27
LRRC28-222	ENST00000561431	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.3	□□□□□ -0.28
LRRC28-222	ENST00000561431	RBM42	Q9BTD8	480 aa	Known RBP	13.16	□□□□□ -0.3
LRRC28-222	ENST00000561431	POLA2	Q14181	598 aa		13.08	□□□□□ -0.32
LRRC28-222	ENST00000561431	MYCN	P04198	464 aa	Predicted RBP	13.07	□□□□□ -0.32
LRRC28-222	ENST00000561431	CHRDL2	Q6WN34	429 aa		13.03	□□□□□ -0.32
LRRC28-222	ENST00000561431	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.84	□□□□□ -0.35
LRRC28-222	ENST00000561431	AKT1S1	Q96B36	256 aa		12.8	□□□□□ -0.36
LRRC28-222	ENST00000561431	FOXD4L1	Q9NU39	408 aa		12.76	□□□□□ -0.37
LRRC28-222	ENST00000561431	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.75	□□□□□ -0.37
LRRC28-222	ENST00000561431	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.73	□□□□□ -0.37
LRRC28-222	ENST00000561431	SP7	Q8TDD2	431 aa	Predicted RBP	12.72	□□□□□ -0.37
LRRC28-222	ENST00000561431	REM2	Q8IYK8	340 aa	Predicted RBP	12.7	□□□□□ -0.38
LRRC28-222	ENST00000561431	OSCAR	Q8IYS5	282 aa		12.69	□□□□□ -0.38
LRRC28-222	ENST00000561431	PIP4P2	Q8N4L2	257 aa		12.66	□□□□□ -0.38
LRRC28-222	ENST00000561431	PITPNM1	O00562	1244 aa		12.58	□□□□□ -0.4
LRRC28-222	ENST00000561431	FXR2	P51116	673 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
LRRC28-222	ENST00000561431	ZBTB22	O15209	634 aa		12.51	□□□□□ -0.41
LRRC28-222	ENST00000561431	HAX1	O00165	279 aa		12.5	□□□□□ -0.41
LRRC28-222	ENST00000561431	ATXN8OS	P0DMR3	200 aa		12.39	□□□□□ -0.43
LRRC28-222	ENST00000561431	EVX2	Q03828	476 aa		12.37	□□□□□ -0.43
LRRC28-222	ENST00000561431	SPDYE2B	A6NHP3	402 aa		12.35	□□□□□ -0.43
LRRC28-222	ENST00000561431	SPDYE6	P0CI01	402 aa		12.35	□□□□□ -0.43
LRRC28-222	ENST00000561431	SPDYE2	Q495Y8	402 aa		12.35	□□□□□ -0.43
LRRC28-222	ENST00000561431	FBLN2	P98095	1184 aa		12.3	□□□□□ -0.44
LRRC28-222	ENST00000561431	PRKAR2A	P13861	404 aa	Known RBP	12.23	□□□□□ -0.45
LRRC28-222	ENST00000561431	MKRN4P	Q13434	485 aa	Predicted RBP	12.23	□□□□□ -0.45
LRRC28-222	ENST00000561431	SPDYE1	Q8NFV5	336 aa	Predicted RBP	12.21	□□□□□ -0.45
LRRC28-222	ENST00000561431	CLEC11A	Q9Y240	323 aa		12.21	□□□□□ -0.45
LRRC28-222	ENST00000561431	SSUH2	Q9Y2M2	353 aa		12.17	□□□□□ -0.46
LRRC28-222	ENST00000561431	ZNF692	Q9BU19	519 aa	Predicted RBP	12.15	□□□□□ -0.46
LRRC28-222	ENST00000561431	C19orf67	A6NJJ6	358 aa		12.14	□□□□□ -0.47
LRRC28-222	ENST00000561431	EHMT2	Q96KQ7	1210 aa		12.1	□□□□□ -0.47
LRRC28-222	ENST00000561431	GABBR2	O75899	941 aa		12.04	□□□□□ -0.48
LRRC28-222	ENST00000561431	CHADL	Q6NUI6	762 aa		12.04	□□□□□ -0.48
LRRC28-222	ENST00000561431	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
LRRC28-222	ENST00000561431	PRR29	P0C7W0	189 aa		11.95	□□□□□ -0.5
LRRC28-222	ENST00000561431	LHX8	Q68G74	356 aa		11.92	□□□□□ -0.5
LRRC28-222	ENST00000561431	CD44	P16070	742 aa	Known RBP	11.83	□□□□□ -0.52
LRRC28-222	ENST00000561431	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.82	□□□□□ -0.52
LRRC28-222	ENST00000561431	POTEI	P0CG38	1075 aa		11.81	□□□□□ -0.52
LRRC28-222	ENST00000561431	CLCN6	P51797	869 aa		11.7	□□□□□ -0.54
LRRC28-222	ENST00000561431	CSRNP3	Q8WYN3	585 aa		11.7	□□□□□ -0.54
LRRC28-222	ENST00000561431	ZNF579	Q8NAF0	562 aa	Known RBP	11.64	□□□□□ -0.55
LRRC28-222	ENST00000561431	DCBLD2	Q96PD2	775 aa		11.62	□□□□□ -0.55
LRRC28-222	ENST00000561431	CREBZF	Q9NS37	354 aa		11.61	□□□□□ -0.55
LRRC28-222	ENST00000561431	ZRANB1	Q9UGI0	708 aa		11.6	□□□□□ -0.55
LRRC28-222	ENST00000561431	STAG3	Q9UJ98	1225 aa		11.54	□□□□□ -0.56
LRRC28-222	ENST00000561431	GALR2	O43603	387 aa	Predicted RBP	11.53	□□□□□ -0.56
LRRC28-222	ENST00000561431	SPDYE4	A6NLX3	237 aa		11.45	□□□□□ -0.58
LRRC28-222	ENST00000561431	OTUD5	Q96G74	571 aa		11.43	□□□□□ -0.58
LRRC28-222	ENST00000561431	PHF12	Q96QT6	1004 aa		11.43	□□□□□ -0.58
LRRC28-222	ENST00000561431	POTEB2	H3BUK9	544 aa		11.42	□□□□□ -0.58
LRRC28-222	ENST00000561431	PAK3	O75914	559 aa	Predicted RBP	11.41	□□□□□ -0.58
LRRC28-222	ENST00000561431	PLSCR2	Q9NRY7	297 aa		11.41	□□□□□ -0.58
LRRC28-222	ENST00000561431	MNX1	P50219	401 aa	Predicted RBP	11.39	□□□□□ -0.59
LRRC28-222	ENST00000561431	NPM1	P06748	294 aa	Known RBP eCLIP	11.35	□□□□□ -0.59
LRRC28-222	ENST00000561431	PELP1	Q8IZL8	1130 aa	Known RBP	11.35	□□□□□ -0.59
LRRC28-222	ENST00000561431	MS4A3	Q96HJ5	214 aa		11.27	□□□□□ -0.61
LRRC28-222	ENST00000561431	ASTL	Q6HA08	431 aa	Predicted RBP	11.26	□□□□□ -0.61
LRRC28-222	ENST00000561431	POTEM	A6NI47	508 aa		11.24	□□□□□ -0.61
LRRC28-222	ENST00000561431	ATMIN	O43313	823 aa	Predicted RBP	11.23	□□□□□ -0.61

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