RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 ARXQ96QS3 562 aa11.43□□□□□ -0.58
RTF1-206ENST00000560447 CDC5LQ99459 802 aaKnown RBP11.43□□□□□ -0.58
RTF1-206ENST00000560447 LARP6Q9BRS8 491 aaKnown RBP11.43□□□□□ -0.58
RTF1-206ENST00000560447 NHSQ6T4R5 1651 aa11.43□□□□□ -0.58
RTF1-206ENST00000560447 MYO5AQ9Y4I1 1855 aaKnown RBP11.42□□□□□ -0.58
RTF1-206ENST00000560447 SALL1Q9NSC2 1324 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 FIBPO43427 364 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 IGSF3O75054 1194 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 ATP6V1AP38606 617 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 MCAMP43121 646 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 RESTQ13127 1097 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 WASHC4Q2M389 1173 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 CDC37L1Q7L3B6 337 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 MARCH10Q8NA82 808 aaPredicted RBP11.42□□□□□ -0.58
RTF1-206ENST00000560447 NSUN7Q8NE18 718 aaKnown RBP11.42□□□□□ -0.58
RTF1-206ENST00000560447 NCOA7Q8NI08 942 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 MTA3Q9BTC8 594 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 DDX19AQ9NUU7 478 aaKnown RBP11.42□□□□□ -0.58
RTF1-206ENST00000560447 C4AP0C0L4 1744 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 C4BP0C0L5 1744 aa11.42□□□□□ -0.58
RTF1-206ENST00000560447 CNTNAP4Q9C0A0 1308 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 H3BQV1 296 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 ZNF213O14771 459 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 SNPHO15079 494 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 GPAA1O43292 621 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 CAVIN2O95810 425 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 GNAT2P19087 354 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 IGHMBP2P38935 993 aaKnown RBP11.41□□□□□ -0.58
RTF1-206ENST00000560447 SCRN1Q12765 414 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 IFFO2Q5TF58 517 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 CCDC102BQ68D86 513 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 ZSCAN30Q86W11 494 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 MB21D2Q8IYB1 491 aaPredicted RBP11.41□□□□□ -0.58
RTF1-206ENST00000560447 CHAMP1Q96JM3 812 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 ZNF396Q96N95 335 aaPredicted RBP11.41□□□□□ -0.58
RTF1-206ENST00000560447 GDPD2Q9HCC8 539 aa11.41□□□□□ -0.58
RTF1-206ENST00000560447 RRAGDQ9NQL2 400 aaPredicted RBP11.41□□□□□ -0.58
RTF1-206ENST00000560447 THSD7AQ9UPZ6 1657 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 NTSR2O95665 410 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 FGAP02671 866 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 PDIA3P30101 505 aaKnown RBP11.4□□□□□ -0.58
RTF1-206ENST00000560447 MAP3K12Q12852 859 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 TRDNQ13061 729 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 SCARF1Q14162 830 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 VPS72Q15906 364 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 RC3H1Q5TC82 1133 aaKnown RBP11.4□□□□□ -0.58
RTF1-206ENST00000560447 SUSD4Q5VX71 490 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 RALYLQ86SE5 291 aaKnown RBP11.4□□□□□ -0.58
RTF1-206ENST00000560447 TTC6Q86TZ1 520 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 SPATA32Q96LK8 384 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 TCEANC2Q96MN5 208 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 MPHOSPH8Q99549 860 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 FUCA2Q9BTY2 467 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 CCDC39Q9UFE4 941 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 TAOK2Q9UL54 1235 aa11.4□□□□□ -0.58
RTF1-206ENST00000560447 PNPLA7Q6ZV29 1317 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 PTPDC1A2A3K4 754 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 GOLGA6L4A6NEF3 574 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 FOXP2O15409 715 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 LY75O60449 1722 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 CCDC192P0DO97 292 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 STK3Q13188 491 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 SF3B3Q15393 1217 aaKnown RBP11.39□□□□□ -0.59
RTF1-206ENST00000560447 RBM43Q6ZSC3 357 aaKnown RBP11.39□□□□□ -0.59
RTF1-206ENST00000560447 LEO1Q8WVC0 666 aaPredicted RBP11.39□□□□□ -0.59
RTF1-206ENST00000560447 TMEM87BQ96K49 555 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 BCL11BQ9C0K0 894 aaPredicted RBP11.39□□□□□ -0.59
RTF1-206ENST00000560447 PUS7LQ9H0K6 701 aaKnown RBP11.39□□□□□ -0.59
RTF1-206ENST00000560447 KIAA1551Q9HCM1 1747 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 NID2Q14112 1375 aa11.39□□□□□ -0.59
RTF1-206ENST00000560447 BTAF1O14981 1849 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 TCRBV5S4A2TA0A5A2 114 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 CTAGE5O15320 804 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 PRC1O43663 620 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 JAK2O60674 1132 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 CDKL5O76039 1030 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 CHGBP05060 677 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 PDE6AP16499 860 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 APOBRQ0VD83 1088 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 ITPK1Q13572 414 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 COL9A3Q14050 684 aaPredicted RBP11.38□□□□□ -0.59
RTF1-206ENST00000560447 MAP3K11Q16584 847 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 SLC10A5Q5PT55 438 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 SLC9C2Q5TAH2 1124 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 SYNE4Q8N205 404 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 SPATA5Q8NB90 893 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 NUP62CLQ9H1M0 184 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 CNNM2Q9H8M5 875 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 RCOR1Q9UKL0 485 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 NOL7Q9UMY1 257 aaKnown RBP11.38□□□□□ -0.59
RTF1-206ENST00000560447 CCDC9Q9Y3X0 531 aaKnown RBP11.38□□□□□ -0.59
RTF1-206ENST00000560447 MYH13Q9UKX3 1938 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 MAST2Q6P0Q8 1798 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 BCL9LQ86UU0 1499 aa11.38□□□□□ -0.59
RTF1-206ENST00000560447 PDS5AQ29RF7 1337 aaKnown RBP11.37□□□□□ -0.59
RTF1-206ENST00000560447 TAF1LQ8IZX4 1826 aa11.37□□□□□ -0.59
RTF1-206ENST00000560447 PATL2C9JE40 543 aaKnown RBP11.37□□□□□ -0.59
RTF1-206ENST00000560447 ADAMTS2O95450 1211 aa11.37□□□□□ -0.59
RTF1-206ENST00000560447 CTDNEP1O95476 244 aa11.37□□□□□ -0.59
RTF1-206ENST00000560447 MSNP26038 577 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms