RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PTPN12Q05209 780 aaKnown RBP6.49□□□□□ -1.37
LDLR-209ENST00000558528 DUSP27Q5VZP5 1158 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 ZNF662Q6ZS27 426 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 NOL8Q76FK4 1167 aaKnown RBP6.49□□□□□ -1.37
LDLR-209ENST00000558528 GJD3Q8N144 294 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 ZNF511Q8NB15 262 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 KLRG1Q96E93 195 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 MYO19Q96H55 970 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 IFT57Q9NWB7 429 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 RCAN3Q9UKA8 241 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 HPS5Q9UPZ3 1129 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 TNS2Q63HR2 1409 aa6.49□□□□□ -1.37
LDLR-209ENST00000558528 WDR90Q96KV7 1748 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 hCG_2014768A0A024R1R8 64 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 SOWAHBA6NEL2 793 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 GIPC1O14908 333 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 PCSK2P16519 638 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 MZF1P28698 734 aaPredicted RBP6.48□□□□□ -1.37
LDLR-209ENST00000558528 EPHA4P54764 986 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 GDF10P55107 478 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 PTPROQ16827 1216 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 AKAP4Q5JQC9 854 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 C1orf141Q5JVX7 400 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 CC2D2BQ6DHV5 1058 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 ZNF746Q6NUN9 644 aaPredicted RBP6.48□□□□□ -1.37
LDLR-209ENST00000558528 USP48Q86UV5 1035 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 CCDC24Q8N4L8 307 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 DNAJC25Q9H1X3 360 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 BTG4Q9NY30 223 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 RRP7AQ9Y3A4 280 aaKnown RBP6.48□□□□□ -1.37
LDLR-209ENST00000558528 SUPT16HQ9Y5B9 1047 aaKnown RBP6.48□□□□□ -1.37
LDLR-209ENST00000558528 ABCC6O95255 1503 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 ERBB3P21860 1342 aa6.48□□□□□ -1.37
LDLR-209ENST00000558528 SOS1Q07889 1333 aaPredicted RBP6.48□□□□□ -1.37
LDLR-209ENST00000558528 COL14A1Q05707 1796 aaKnown RBP6.47□□□□□ -1.37
LDLR-209ENST00000558528 USP54Q70EL1 1684 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 GOLGA8CPA6NN73 597 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 TNFRSF10BO14763 440 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 PLSCR1O15162 318 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 MARCH6O60337 910 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 ADH1BP00325 375 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 INHAP05111 366 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 RPLP1P05386 114 aaKnown RBP6.47□□□□□ -1.37
LDLR-209ENST00000558528 EIF4BP23588 611 aaKnown RBP6.47□□□□□ -1.37
LDLR-209ENST00000558528 TNNI2P48788 182 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 PSMA6P60900 246 aaKnown RBP6.47□□□□□ -1.37
LDLR-209ENST00000558528 ERVK-9P63128 1117 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 RNF187Q5TA31 235 aaPredicted RBP6.47□□□□□ -1.37
LDLR-209ENST00000558528 PPP1R18Q6NYC8 613 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 TOM1L2Q6ZVM7 507 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 KCNB2Q92953 911 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 MRFAP1L1Q96HT8 127 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 PHACTR3Q96KR7 559 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 SLC4A9Q96Q91 983 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 CARD10Q9BWT7 1032 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 NIF3L1Q9GZT8 377 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 SAP130Q9H0E3 1048 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 TSPAN10Q9H1Z9 355 aaPredicted RBP6.47□□□□□ -1.37
LDLR-209ENST00000558528 WDR17Q8IZU2 1322 aa6.47□□□□□ -1.37
LDLR-209ENST00000558528 KIAA0232Q92628 1395 aa6.46□□□□□ -1.37
LDLR-209ENST00000558528 NFAT5O94916 1531 aa6.46□□□□□ -1.37
LDLR-209ENST00000558528 PIK3C2AO00443 1686 aa6.46□□□□□ -1.37
LDLR-209ENST00000558528 IPO8O15397 1037 aaKnown RBP6.46□□□□□ -1.38
LDLR-209ENST00000558528 ZBTB24O43167 697 aaPredicted RBP6.46□□□□□ -1.38
LDLR-209ENST00000558528 GRIN3BO60391 1043 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 FGRP09769 529 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 GJA8P48165 433 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 SCNN1DP51172 638 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 MTHFSDQ2M296 383 aaKnown RBP6.46□□□□□ -1.38
LDLR-209ENST00000558528 COX20Q5RI15 118 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 CCDC181Q5TID7 509 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 CKAP2LQ8IYA6 745 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 IFNL2Q8IZJ0 200 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 MICAL1Q8TDZ2 1067 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 BAP1Q92560 729 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 SPACA7Q96KW9 195 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 CSRNP1Q96S65 589 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 KCTD15Q96SI1 283 aaPredicted RBP6.46□□□□□ -1.38
LDLR-209ENST00000558528 C2orf49Q9BVC5 232 aaPredicted RBP6.46□□□□□ -1.38
LDLR-209ENST00000558528 CHMP4BQ9H444 224 aaKnown RBP6.46□□□□□ -1.38
LDLR-209ENST00000558528 PRDM9Q9NQV7 894 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 AXIN2Q9Y2T1 843 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 THRAP3Q9Y2W1 955 aaKnown RBP6.46□□□□□ -1.38
LDLR-209ENST00000558528 MAP4K5Q9Y4K4 846 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 SPATA31A1Q5TZJ5 1347 aa6.46□□□□□ -1.38
LDLR-209ENST00000558528 ZNF853P0CG23 659 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 YBX3P16989 372 aaKnown RBP eCLIP6.45□□□□□ -1.38
LDLR-209ENST00000558528 ANAPC15P60006 121 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 FOXK2Q01167 660 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 TAF7Q15545 349 aaPredicted RBP6.45□□□□□ -1.38
LDLR-209ENST00000558528 CHRNA2Q15822 529 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 ALDH1L2Q3SY69 923 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 PTCRAQ6ISU1 281 aaPredicted RBP6.45□□□□□ -1.38
LDLR-209ENST00000558528 POTEEQ6S8J3 1075 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 MCF2L2Q86YR7 1114 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 NBPF15Q8N660 670 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 TTC16Q8NEE8 873 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 FOXJ1Q92949 421 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 MKL1Q969V6 931 aa6.45□□□□□ -1.38
LDLR-209ENST00000558528 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms