RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 ISCA1Q9BUE6 129 aa12.39□□□□□ -0.43
NEDD1-211ENST00000557454 COA1Q9GZY4 146 aa12.39□□□□□ -0.43
NEDD1-211ENST00000557454 SYNGAP1Q96PV0 1343 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 SPDYE2BA6NHP3 402 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 SPDYE5A6NIY4 337 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 MYO1BO43795 1136 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 SPDYE6P0CI01 402 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 U2AF1L5P0DN76 240 aaPredicted RBP12.38□□□□□ -0.43
NEDD1-211ENST00000557454 CAPN2P17655 700 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 GTF2IP78347 998 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 MDM2Q00987 491 aaPredicted RBP12.38□□□□□ -0.43
NEDD1-211ENST00000557454 U2AF1Q01081 240 aaKnown RBP eCLIP12.38□□□□□ -0.43
NEDD1-211ENST00000557454 CNGB1Q14028 1251 aaPredicted RBP12.38□□□□□ -0.43
NEDD1-211ENST00000557454 CFAP100Q494V2 611 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 CSADQ9Y600 493 aa12.38□□□□□ -0.43
NEDD1-211ENST00000557454 HSPA5P11021 654 aaKnown RBP12.37□□□□□ -0.43
NEDD1-211ENST00000557454 FOSL2P15408 326 aa12.37□□□□□ -0.43
NEDD1-211ENST00000557454 FCGRTP55899 365 aa12.37□□□□□ -0.43
NEDD1-211ENST00000557454 MAP3K9P80192 1104 aa12.37□□□□□ -0.43
NEDD1-211ENST00000557454 SNAPC2Q13487 334 aa12.37□□□□□ -0.43
NEDD1-211ENST00000557454 ANKRD18AQ8IVF6 992 aa12.37□□□□□ -0.43
NEDD1-211ENST00000557454 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.37□□□□□ -0.43
NEDD1-211ENST00000557454 CACNA1AO00555 2505 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 NCOR1O75376 2440 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 F8W031 263 aaPredicted RBP12.36□□□□□ -0.43
NEDD1-211ENST00000557454 IRF6O14896 467 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 KLRK1P26718 216 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 CCDC152Q4G0S7 254 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 CERS5Q8N5B7 392 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 PRMT6Q96LA8 375 aaPredicted RBP12.36□□□□□ -0.43
NEDD1-211ENST00000557454 NBPF3Q9H094 633 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 SEMA6BQ9H3T3 888 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 SNCAIPQ9Y6H5 919 aa12.36□□□□□ -0.43
NEDD1-211ENST00000557454 FLT3LGP49771 235 aa12.35□□□□□ -0.43
NEDD1-211ENST00000557454 CCT4P50991 539 aaKnown RBP12.35□□□□□ -0.43
NEDD1-211ENST00000557454 ANKLE1Q8NAG6 615 aa12.35□□□□□ -0.43
NEDD1-211ENST00000557454 USP38Q8NB14 1042 aa12.35□□□□□ -0.43
NEDD1-211ENST00000557454 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.35□□□□□ -0.43
NEDD1-211ENST00000557454 C11orf49Q9H6J7 331 aa12.35□□□□□ -0.43
NEDD1-211ENST00000557454 BDP1A6H8Y1 2624 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 PDHXO00330 501 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 ERO1BQ86YB8 467 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 PLBD2Q8NHP8 589 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 PXYLP1Q8TE99 480 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 TEPSINQ96N21 525 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 TSPYL4Q9UJ04 414 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 MINPP1Q9UNW1 487 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 NUDCQ9Y266 331 aa12.34□□□□□ -0.43
NEDD1-211ENST00000557454 ECM29Q5VYK3 1845 aa12.33□□□□□ -0.44
NEDD1-211ENST00000557454 PPIL2Q13356 520 aa12.33□□□□□ -0.44
NEDD1-211ENST00000557454 TNFAIP1Q13829 316 aa12.33□□□□□ -0.44
NEDD1-211ENST00000557454 ANKRD23Q86SG2 305 aa12.33□□□□□ -0.44
NEDD1-211ENST00000557454 TTYH1Q9H313 450 aaPredicted RBP12.33□□□□□ -0.44
NEDD1-211ENST00000557454 TAOK2Q9UL54 1235 aa12.33□□□□□ -0.44
NEDD1-211ENST00000557454 PFASO15067 1338 aa12.33□□□□□ -0.44
NEDD1-211ENST00000557454 PER1O15534 1290 aaPredicted RBP12.32□□□□□ -0.44
NEDD1-211ENST00000557454 BCRP11274 1271 aa12.32□□□□□ -0.44
NEDD1-211ENST00000557454 RBM5P52756 815 aaKnown RBP eCLIP12.32□□□□□ -0.44
NEDD1-211ENST00000557454 EIF4G2P78344 907 aaKnown RBP eCLIP12.32□□□□□ -0.44
NEDD1-211ENST00000557454 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.32□□□□□ -0.44
NEDD1-211ENST00000557454 ZBTB38Q8NAP3 1195 aaPredicted RBP12.32□□□□□ -0.44
NEDD1-211ENST00000557454 CFAP53Q96M91 514 aa12.32□□□□□ -0.44
NEDD1-211ENST00000557454 TMEM39BQ9GZU3 492 aa12.32□□□□□ -0.44
NEDD1-211ENST00000557454 SPDYE2Q495Y8 402 aa12.31□□□□□ -0.44
NEDD1-211ENST00000557454 JARID2Q92833 1246 aaPredicted RBP12.31□□□□□ -0.44
NEDD1-211ENST00000557454 ZKSCAN4Q969J2 545 aaPredicted RBP12.31□□□□□ -0.44
NEDD1-211ENST00000557454 WRNIP1Q96S55 665 aa12.31□□□□□ -0.44
NEDD1-211ENST00000557454 CHPF2Q9P2E5 772 aa12.31□□□□□ -0.44
NEDD1-211ENST00000557454 ZNF70Q9UC06 446 aaPredicted RBP12.31□□□□□ -0.44
NEDD1-211ENST00000557454 DDX60LQ5H9U9 1706 aaKnown RBP12.31□□□□□ -0.44
NEDD1-211ENST00000557454 SPDYE4A6NLX3 237 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 TCP10L2B9ZVM9 353 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 PDE8AO60658 829 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 CYP2C8P10632 490 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 HSP90B1P14625 803 aaKnown RBP12.3□□□□□ -0.44
NEDD1-211ENST00000557454 DSG3P32926 999 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 TRIM28Q13263 835 aaKnown RBP12.3□□□□□ -0.44
NEDD1-211ENST00000557454 IRF5Q13568 498 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 ADAMTS19Q8TE59 1207 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 CDC5LQ99459 802 aaKnown RBP12.3□□□□□ -0.44
NEDD1-211ENST00000557454 PARK7Q99497 189 aaKnown RBP12.3□□□□□ -0.44
NEDD1-211ENST00000557454 BSDC1Q9NW68 430 aaPredicted RBP12.3□□□□□ -0.44
NEDD1-211ENST00000557454 HCN4Q9Y3Q4 1203 aa12.3□□□□□ -0.44
NEDD1-211ENST00000557454 UHRF1Q96T88 793 aaPredicted RBP12.29□□□□□ -0.44
NEDD1-211ENST00000557454 TDRD3Q9H7E2 651 aaKnown RBP12.29□□□□□ -0.44
NEDD1-211ENST00000557454 CD209Q9NNX6 404 aa12.29□□□□□ -0.44
NEDD1-211ENST00000557454 JAG2Q9Y219 1238 aa12.29□□□□□ -0.44
NEDD1-211ENST00000557454 ARIH1Q9Y4X5 557 aaPredicted RBP12.29□□□□□ -0.44
NEDD1-211ENST00000557454 MUC6Q6W4X9 2439 aa12.29□□□□□ -0.44
NEDD1-211ENST00000557454 TNPO2O14787 897 aaKnown RBP12.28□□□□□ -0.44
NEDD1-211ENST00000557454 MOGSQ13724 837 aa12.28□□□□□ -0.44
NEDD1-211ENST00000557454 LRRC26Q2I0M4 334 aa12.28□□□□□ -0.44
NEDD1-211ENST00000557454 ALYREFQ86V81 257 aaKnown RBP12.28□□□□□ -0.44
NEDD1-211ENST00000557454 LBHD1Q9BQE6 289 aaPredicted RBP12.28□□□□□ -0.44
NEDD1-211ENST00000557454 LEMD3Q9Y2U8 911 aa12.28□□□□□ -0.44
NEDD1-211ENST00000557454 PPATQ06203 517 aa12.27□□□□□ -0.45
NEDD1-211ENST00000557454 C1QTNF1Q9BXJ1 281 aa12.27□□□□□ -0.45
NEDD1-211ENST00000557454 OGDHLQ9ULD0 1010 aa12.27□□□□□ -0.45
NEDD1-211ENST00000557454 DNAH12Q6ZR08 3092 aa12.26□□□□□ -0.45
NEDD1-211ENST00000557454 PCCAP05165 728 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms