RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ARHGAP39Q9C0H5 1083 aa11.97□□□□□ -0.49
SYNE2-224ENST00000557024 ZFYVE28Q9HCC9 887 aa11.97□□□□□ -0.49
SYNE2-224ENST00000557024 CD209Q9NNX6 404 aa11.97□□□□□ -0.49
SYNE2-224ENST00000557024 A0A0C4DFX4 3053 aa11.97□□□□□ -0.49
SYNE2-224ENST00000557024 CCL15-CCL14A0A0B4J2E2 113 aa11.96□□□□□ -0.49
SYNE2-224ENST00000557024 SNAP23O00161 211 aa11.96□□□□□ -0.49
SYNE2-224ENST00000557024 GTPBP6O43824 516 aaPredicted RBP11.96□□□□□ -0.49
SYNE2-224ENST00000557024 DDX58O95786 925 aaKnown RBP11.96□□□□□ -0.49
SYNE2-224ENST00000557024 IGKV5-2P06315 115 aa11.96□□□□□ -0.49
SYNE2-224ENST00000557024 CCL15Q16663 113 aa11.96□□□□□ -0.49
SYNE2-224ENST00000557024 FAM43AQ8N2R8 423 aa11.96□□□□□ -0.49
SYNE2-224ENST00000557024 ANKRD2Q9GZV1 360 aa11.96□□□□□ -0.49
SYNE2-224ENST00000557024 CLCN6P51797 869 aa11.95□□□□□ -0.5
SYNE2-224ENST00000557024 RBM5P52756 815 aaKnown RBP eCLIP11.95□□□□□ -0.5
SYNE2-224ENST00000557024 RUNDC1Q96C34 613 aa11.95□□□□□ -0.5
SYNE2-224ENST00000557024 SHISA4Q96DD7 197 aa11.95□□□□□ -0.5
SYNE2-224ENST00000557024 MPHOSPH8Q99549 860 aa11.95□□□□□ -0.5
SYNE2-224ENST00000557024 JAG2Q9Y219 1238 aa11.95□□□□□ -0.5
SYNE2-224ENST00000557024 ITGA6P23229 1130 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 GTF2A2P52657 109 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 CHRNDQ07001 517 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 VGLL4Q14135 290 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 KIF22Q14807 665 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 MTFR1Q15390 333 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 CWF19L2Q2TBE0 894 aaKnown RBP11.94□□□□□ -0.5
SYNE2-224ENST00000557024 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.94□□□□□ -0.5
SYNE2-224ENST00000557024 UBE3BQ7Z3V4 1068 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 CDAN1Q8IWY9 1227 aa11.94□□□□□ -0.5
SYNE2-224ENST00000557024 PI4KAP2A4QPH2 592 aa11.93□□□□□ -0.5
SYNE2-224ENST00000557024 TAF5LO75529 589 aa11.93□□□□□ -0.5
SYNE2-224ENST00000557024 LACTBP83111 547 aaPredicted RBP11.93□□□□□ -0.5
SYNE2-224ENST00000557024 PI4KAP1Q8N8J0 262 aa11.93□□□□□ -0.5
SYNE2-224ENST00000557024 C8orf58Q8NAV2 365 aa11.93□□□□□ -0.5
SYNE2-224ENST00000557024 HELBQ8NG08 1087 aaPredicted RBP11.93□□□□□ -0.5
SYNE2-224ENST00000557024 PCDHB8Q9UN66 801 aa11.93□□□□□ -0.5
SYNE2-224ENST00000557024 PCDHB13Q9Y5F0 798 aa11.93□□□□□ -0.5
SYNE2-224ENST00000557024 LAMB1P07942 1786 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 IRS2Q9Y4H2 1338 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 NEURL1BA8MQ27 555 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 ANP32CO43423 234 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 TLR2O60603 784 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 ZNF853P0CG23 659 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 NEXNQ0ZGT2 675 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 TNFAIP1Q13829 316 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 KSR2Q6VAB6 950 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 PRO3102Q9H379 93 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 ZNF70Q9UC06 446 aaPredicted RBP11.92□□□□□ -0.5
SYNE2-224ENST00000557024 CSADQ9Y600 493 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 SPEF2Q9C093 1822 aa11.92□□□□□ -0.5
SYNE2-224ENST00000557024 COL6A3P12111 3177 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 TCP10L2B9ZVM9 353 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 H7C1W4 665 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 WDHD1O75717 1129 aaPredicted RBP11.91□□□□□ -0.5
SYNE2-224ENST00000557024 IL1R1P14778 569 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 MAP3K9P80192 1104 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 WDR43Q15061 677 aaKnown RBP eCLIP11.91□□□□□ -0.5
SYNE2-224ENST00000557024 CCDC30Q5VVM6 783 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 ZNF804AQ7Z570 1209 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.91□□□□□ -0.5
SYNE2-224ENST00000557024 TEPSINQ96N21 525 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 TMEM39BQ9GZU3 492 aa11.91□□□□□ -0.5
SYNE2-224ENST00000557024 TDRD3Q9H7E2 651 aaKnown RBP11.91□□□□□ -0.5
SYNE2-224ENST00000557024 BTBD19C9JJ37 291 aa11.9□□□□□ -0.5
SYNE2-224ENST00000557024 SOX1O00570 391 aaPredicted RBP11.9□□□□□ -0.5
SYNE2-224ENST00000557024 GNRH1P01148 92 aa11.9□□□□□ -0.5
SYNE2-224ENST00000557024 FKBP1AP62942 108 aaKnown RBP11.9□□□□□ -0.5
SYNE2-224ENST00000557024 C15orf52Q6ZUT6 534 aaKnown RBP11.9□□□□□ -0.5
SYNE2-224ENST00000557024 UBE2Q1Q7Z7E8 422 aa11.9□□□□□ -0.5
SYNE2-224ENST00000557024 HTATIP2Q9BUP3 242 aa11.9□□□□□ -0.5
SYNE2-224ENST00000557024 IFT57Q9NWB7 429 aa11.9□□□□□ -0.5
SYNE2-224ENST00000557024 ADAMTS8Q9UP79 889 aa11.9□□□□□ -0.5
SYNE2-224ENST00000557024 SPDYE5A6NIY4 337 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 ZBTB7BO15156 539 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-224ENST00000557024 CETPP11597 493 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 CCL5P13501 91 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 CTGFP29279 349 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 PRMT2P55345 433 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 GNAI1P63096 354 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 RALBP1Q15311 655 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 ZNF467Q7Z7K2 595 aaPredicted RBP11.89□□□□□ -0.51
SYNE2-224ENST00000557024 NKX2-3Q8TAU0 364 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 TRIM47Q96LD4 638 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 PLA2G12BQ9BX93 195 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 NR2E3Q9Y5X4 410 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 CUL9Q8IWT3 2517 aa11.89□□□□□ -0.51
SYNE2-224ENST00000557024 ANKRD18BA2A2Z9 1011 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 CSF1RP07333 972 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 GJB1P08034 283 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 GRK4P32298 578 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 PSMC4P43686 418 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 GJA8P48165 433 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 CASP7P55210 303 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 GCKRQ14397 625 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 MFSD14BQ5SR56 506 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 DZIP1LQ8IYY4 767 aaKnown RBP11.88□□□□□ -0.51
SYNE2-224ENST00000557024 TSPYL6Q8N831 410 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 RAET1EQ8TD07 263 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 LRCH3Q96II8 777 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 RNF208Q9H0X6 261 aa11.88□□□□□ -0.51
SYNE2-224ENST00000557024 ZCCHC17Q9NP64 241 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms