RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 TAF1P21675 1872 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 PRPF40AO75400 957 aaKnown RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 TOB2Q14106 344 aaPredicted RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 KIF6Q6ZMV9 814 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 TCEANC2Q96MN5 208 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 CCDC85AQ96PX6 553 aaPredicted RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 GRPEL1Q9HAV7 217 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 GOPCQ9HD26 462 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 PDRG1Q9NUG6 133 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 ADAMTS2O95450 1211 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 CYP21A2P08686 494 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 GPTP24298 496 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 ADORA1P30542 326 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 ZNF662Q6ZS27 426 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 MARCH10Q8NA82 808 aaPredicted RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 TTLL11Q8NHH1 800 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SYTL4Q96C24 671 aaPredicted RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SPATA32Q96LK8 384 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 NEUROD6Q96NK8 337 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 PAG1Q9NWQ8 432 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SMC3Q9UQE7 1217 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 CYP46A1Q9Y6A2 500 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 U3KPZ7 1027 aaPredicted RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SMAPO00193 183 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 FOXP2O15409 715 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SETSIPP0DME0 302 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 ZKSCAN1P17029 563 aaPredicted RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SYT1P21579 422 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 KCNA1Q09470 495 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SCARF1Q14162 830 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.94□□□□□ -1.46
TMEM260-210ENST00000556422 CCDC83Q8IWF9 413 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 VGLL2Q8N8G2 317 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 SPOCK3Q9BQ16 436 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 GREM2Q9H772 168 aa5.94□□□□□ -1.46
TMEM260-210ENST00000556422 GOLGB1Q14789 3259 aaKnown RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 SPATA31A5Q5VU36 1347 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 SPATA31A7Q8IWB4 1347 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 A0A0G2JLW4 131 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 RPS6KB1P23443 525 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 PAX7P23759 505 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 IL6STP40189 918 aaPredicted RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 MRE11P49959 708 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 MCMDC2Q4G0Z9 681 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 MEX3CQ5U5Q3 659 aaKnown RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 CAVIN1Q6NZI2 390 aaKnown RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 INTS5Q6P9B9 1019 aaKnown RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 STOX1Q6ZVD7 989 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 RMI1Q9H9A7 625 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 TMEM63CQ9P1W3 806 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 WWC3Q9ULE0 1092 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 TMCO5BA8MYB1 307 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 PPFIA4O75335 1185 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 EIF5P55010 431 aaKnown RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 ZNF445P59923 1031 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 PPP2R5AQ15172 486 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 CCDC57Q2TAC2 916 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 ZSCAN23Q3MJ62 389 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 CTR9Q6PD62 1173 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 ALDH8A1Q9H2A2 487 aaPredicted RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 IRAK4Q9NWZ3 460 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 HMG20BQ9P0W2 317 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 KLHL42Q9P2K6 505 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 TBC1D2BQ9UPU7 963 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 THRAP3Q9Y2W1 955 aaKnown RBP5.93□□□□□ -1.46
TMEM260-210ENST00000556422 MAST3O60307 1309 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 TERF1P54274 439 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 CTSWP56202 376 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 KIAA2012Q0VF49 1180 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 IRF5Q13568 498 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 DDB1Q16531 1140 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 ZMYM1Q5SVZ6 1142 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 ZNF34Q8IZ26 560 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 NECAB1Q8N987 351 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 GDPD2Q9HCC8 539 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 CHD4Q14839 1912 aa5.93□□□□□ -1.46
TMEM260-210ENST00000556422 WDR33Q9C0J8 1336 aaKnown RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 STX6O43752 255 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 LMNB1P20700 586 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 ITGA6P23229 1130 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 GJB2P29033 226 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 ABCD1P33897 745 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 RBM5P52756 815 aaKnown RBP eCLIP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 ITPK1Q13572 414 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 PI16Q6UXB8 463 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 DZIP3Q86Y13 1208 aaKnown RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 RETREG2Q8NC44 543 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 XAGE2Q96GT9 111 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 SLC24A3Q9HC58 644 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 SH2B1Q9NRF2 756 aaPredicted RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 CALCOCO1Q9P1Z2 691 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 SCN7AQ01118 1682 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 ERVV-1B6SEH8 477 aa5.92□□□□□ -1.46
TMEM260-210ENST00000556422 KIF1CO43896 1103 aaKnown RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 IFIT1P09914 478 aaKnown RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 ZSCAN22P10073 491 aaPredicted RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 IFIT5Q13325 482 aaKnown RBP5.92□□□□□ -1.46
TMEM260-210ENST00000556422 RNF20Q5VTR2 975 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 192.4 ms