RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 TMC4Q7Z404 712 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.11□□□□□ -1.912e-6■■■□□ 14.7
PRPF39-207ENST00000554439 C17orf53Q8N3J3 647 aaPredicted RBP3.11□□□□□ -1.91
PRPF39-207ENST00000554439 C8orf58Q8NAV2 365 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 ETNK1Q9HBU6 452 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 MBIPQ9NS73 344 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 ZHX1Q9UKY1 873 aaPredicted RBP3.11□□□□□ -1.91
PRPF39-207ENST00000554439 WWC3Q9ULE0 1092 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 LRFN2Q9ULH4 789 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 ZKSCAN5Q9Y2L8 839 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 USP32Q8NFA0 1604 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 ATP7AQ04656 1500 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 IL16Q14005 1332 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 CHD1O14646 1710 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 ZBTB39O15060 712 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 DTNBO60941 627 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 INHAP05111 366 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 HMGB1P09429 215 aaKnown RBP3.11□□□□□ -1.91
PRPF39-207ENST00000554439 SDSP20132 328 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 GDF10P55107 478 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 DAB2P98082 770 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 RABEP1Q15276 862 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 TTC22Q5TAA0 569 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 C16orf46Q6P387 395 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 ALKBH8Q96BT7 664 aaKnown RBP3.11□□□□□ -1.91
PRPF39-207ENST00000554439 ZFP42Q96MM3 310 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 SLC4A9Q96Q91 983 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 DUSP9Q99956 384 aaKnown RBP3.11□□□□□ -1.91
PRPF39-207ENST00000554439 C2orf49Q9BVC5 232 aaPredicted RBP3.11□□□□□ -1.91
PRPF39-207ENST00000554439 QTRT2Q9H974 415 aaKnown RBP3.11□□□□□ -1.91
PRPF39-207ENST00000554439 EFCAB6Q5THR3 1501 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 SETBP1Q9Y6X0 1596 aa3.11□□□□□ -1.91
PRPF39-207ENST00000554439 PPLO60437 1756 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 ADGRB3O60242 1522 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 LRRC7Q96NW7 1537 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 RAB15P59190 212 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 NUCB2P80303 420 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 SF3A1Q15459 793 aaKnown RBP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 POTEAQ6S8J7 498 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 LRSAM1Q6UWE0 723 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 NT5DC4Q86YG4 428 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 CITED4Q96RK1 184 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 CDV3Q9UKY7 258 aaKnown RBP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 TCHHQ07283 1943 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 ARHGAP31Q2M1Z3 1444 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 GLI2P10070 1586 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 ABCC4O15439 1325 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 CAMSAP1Q5T5Y3 1602 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 NDUFB5O43674 189 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 GADD45BO75293 160 aaPredicted RBP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 MYCP01106 439 aaPredicted RBP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 LDHBP07195 334 aaKnown RBP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 TERF1P54274 439 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 KRT76Q01546 638 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 TRIM32Q13049 653 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 TWISTNBQ3B726 338 aaPredicted RBP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 HS1BP3Q53T59 392 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 CFHR5Q9BXR6 569 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 MAP4K5Q9Y4K4 846 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 PTCH1Q13635 1447 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 NPATQ14207 1427 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 ARHGEF28Q8N1W1 1705 aaKnown RBP3.1□□□□□ -1.91
PRPF39-207ENST00000554439 FANCAO15360 1455 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 NSD2O96028 1365 aa3.1□□□□□ -1.91
PRPF39-207ENST00000554439 NEURL4Q96JN8 1562 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 PTMAP06454 111 aaKnown RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 NEK4P51957 841 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 SKOR1P84550 965 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 TBCELQ5QJ74 424 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 DNTTIP2Q5QJE6 756 aaKnown RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 ZMYM1Q5SVZ6 1142 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 INTS3Q68E01 1043 aaKnown RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 CC2D2BQ6DHV5 1058 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 GIMAP6Q6P9H5 292 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 SASS6Q6UVJ0 657 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 ATCAYQ86WG3 371 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 STAG2Q8N3U4 1231 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 TMEM87AQ8NBN3 555 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 TMX3Q96JJ7 454 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 DMRTB1Q96MA1 342 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 DCTPP1Q9H773 170 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 TTC12Q9H892 705 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 TMPRSS4Q9NRS4 437 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 CABP1Q9NZU7 370 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 SCHIP1Q9P0W5 487 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 STIM2Q9P246 746 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 POLKQ9UBT6 870 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 PPP1R1BQ9UD71 204 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 PALD1Q9ULE6 856 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 EMILIN1Q9Y6C2 1016 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 CD163L1Q9NR16 1453 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 PIK3R4Q99570 1358 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 A0A0U1RQG5 324 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 DYNC1I1O14576 645 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 GRM5P41594 1212 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 MAPK8P45983 427 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 CBX1P83916 185 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 MTFR1Q15390 333 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 NFE2L2Q16236 605 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms