RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	FAM170B	A6NMN3	283 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	KIF4A	O95239	1232 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	TIAF1	O95411	115 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	CFP	P27918	469 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	SCNN1A	P37088	669 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	MESP2	Q0VG99	397 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	NUTM2G	Q5VZR2	741 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	CDPF1	Q6NVV7	123 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	WWC1	Q8IX03	1113 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	SMG8	Q8ND04	991 aa	Known RBP	4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	GLIS3	Q8NEA6	775 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	FBLIM1	Q8WUP2	373 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	TMPRSS13	Q9BYE2	586 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	SUGCT	Q9HAC7	445 aa		4.29	□□□□□ -1.72
PTCH1-223	ENST00000551623	KIF21B	O75037	1637 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	USP11	P51784	963 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	DUSP27	Q5VZP5	1158 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	LCNL1	Q6ZST4	164 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	STK11IP	Q8N1F8	1099 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	SLC7A3	Q8WY07	619 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	GATA6	Q92908	595 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	POP1	Q99575	1024 aa	Known RBP	4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	RC3H2	Q9HBD1	1191 aa	Known RBP	4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	LRRC4C	Q9HCJ2	640 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	CYP4F12	Q9HCS2	524 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	CFAP43	Q8NDM7	1665 aa		4.28	□□□□□ -1.72
PTCH1-223	ENST00000551623	BCORL1	Q5H9F3	1711 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	CUL7	Q14999	1698 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	UBAP1L	F5GYI3	381 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	CYP27A1	Q02318	531 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	DPYD	Q12882	1025 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	SPRED2	Q7Z698	418 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	C1QL4	Q86Z23	238 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	CEP120	Q8N960	986 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	EZH1	Q92800	747 aa	Predicted RBP	4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	YIPF2	Q9BWQ6	316 aa		4.27	□□□□□ -1.73
PTCH1-223	ENST00000551623	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.27	□□□□□ -1.73	1e-16	■■■■■ 250
PTCH1-223	ENST00000551623	DISP1	Q96F81	1524 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	ZCCHC11	Q5TAX3	1644 aa	Known RBP	4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	MADD	Q8WXG6	1647 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	POM121C	A8CG34	1229 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	PRKCSH	P14314	528 aa	Predicted RBP	4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	DRD2	P14416	443 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	WEE1	P30291	646 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	RAP1GAP	P47736	663 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	ARL4D	P49703	201 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	C19orf57	Q0VDD7	668 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	TTC39B	Q5VTQ0	682 aa	Predicted RBP	4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	LARP1	Q6PKG0	1096 aa	Known RBP	4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	ZNF765	Q7L2R6	523 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	NCAPG2	Q86XI2	1143 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	SIAH1	Q8IUQ4	282 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	KRTAP9-8	Q9BYQ0	159 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	LMCD1	Q9NZU5	365 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	RAPGEFL1	Q9UHV5	662 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	JAG2	Q9Y219	1238 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	CD109	Q6YHK3	1445 aa		4.26	□□□□□ -1.73
PTCH1-223	ENST00000551623	RNASE1	P07998	156 aa	Known RBP	4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	FUT4	P22083	530 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	PTK7	Q13308	1070 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	CRTC2	Q53ET0	693 aa	Predicted RBP	4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	COX20	Q5RI15	118 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	HDGFL1	Q5TGJ6	251 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	HGSNAT	Q68CP4	663 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	TTLL10	Q6ZVT0	673 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	ETFBKMT	Q8IXQ9	262 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	C2CD4A	Q8NCU7	369 aa	Predicted RBP	4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	YEATS2	Q9ULM3	1422 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	UGGT2	Q9NYU1	1516 aa		4.25	□□□□□ -1.73
PTCH1-223	ENST00000551623	LTBP4	Q8N2S1	1624 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	FRMPD1	Q5SYB0	1578 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	TTC37	Q6PGP7	1564 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	PTPRT	O14522	1441 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	LOC100289279	A0A1B0GTE1	492 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	LRRC10B	A6NIK2	292 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	TSPAN15	O95858	294 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	CYP2E1	P05181	493 aa	Predicted RBP	4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	ZSCAN22	P10073	491 aa	Predicted RBP	4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	BNIP3	Q12983	259 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	PIK3R5	Q8WYR1	880 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	MISP3	Q96FF7	219 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	POM121	Q96HA1	1249 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	USP26	Q9BXU7	913 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	MBNL3	Q9NUK0	354 aa	Known RBP	4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	ABI2	Q9NYB9	513 aa	Predicted RBP	4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	ARHGEF40	Q8TER5	1519 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	NEO1	Q92859	1461 aa		4.24	□□□□□ -1.73
PTCH1-223	ENST00000551623	IQGAP2	Q13576	1575 aa		4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623		A6NJR5	290 aa		4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	DLGAP3	O95886	979 aa		4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	SOX4	Q06945	474 aa	Predicted RBP	4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	EXOSC6	Q5RKV6	272 aa	Known RBP	4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	ANKMY2	Q8IV38	441 aa		4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	LRRN4CL	Q8ND94	238 aa		4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	FAM13B	Q9NYF5	915 aa		4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	ADAMTS6	Q9UKP5	1117 aa		4.23	□□□□□ -1.73
PTCH1-223	ENST00000551623	SOX13	Q9UN79	622 aa		4.23	□□□□□ -1.73

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