RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 DYMQ7RTS9 669 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 LRRC56Q8IYG6 542 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-207ENST00000551486 GATA6Q92908 595 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 ARXQ96QS3 562 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 RAD18Q9NS91 495 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 RAPGEFL1Q9UHV5 662 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 VAV3Q9UKW4 847 aa3.81□□□□□ -1.8
LIMA1-207ENST00000551486 ADH5P11766 374 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 RFX1P22670 979 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 PRKCQQ04759 706 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 KCNMB1Q16558 191 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 MLANAQ16655 118 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 SWI5Q1ZZU3 235 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 HGSNATQ68CP4 663 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 ARHGAP27Q6ZUM4 889 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 NETO1Q8TDF5 533 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 CALR3Q96L12 384 aaKnown RBP3.8□□□□□ -1.8
LIMA1-207ENST00000551486 PRIMPOLQ96LW4 560 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 SAP130Q9H0E3 1048 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 MBNL3Q9NUK0 354 aaKnown RBP3.8□□□□□ -1.8
LIMA1-207ENST00000551486 TMEM63CQ9P1W3 806 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 STIM2Q9P246 746 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 ACTL7BQ9Y614 415 aa3.8□□□□□ -1.8
LIMA1-207ENST00000551486 NFKBIEO00221 500 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 TSPAN15O95858 294 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 CYP11A1P05108 521 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 CD8BP10966 210 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 ASPAP45381 313 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 AKAP4Q5JQC9 854 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 ZSWIM9Q86XI8 627 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 DDX54Q8TDD1 881 aaKnown RBP3.79□□□□□ -1.8
LIMA1-207ENST00000551486 ASAP3Q8TDY4 903 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 NXPE3Q969Y0 559 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 OSMRQ99650 979 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 SEMA6CQ9H3T2 930 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 CNTN3Q9P232 1028 aa3.79□□□□□ -1.8
LIMA1-207ENST00000551486 NFIBO00712 420 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 PRMT3O60678 531 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 TRPA1O75762 1119 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 DLGAP3O95886 979 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 EDN3P14138 238 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 BUD31P41223 144 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-207ENST00000551486 ANGEL2Q5VTE6 544 aaKnown RBP3.78□□□□□ -1.8
LIMA1-207ENST00000551486 XKR5Q6UX68 686 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 VN1R5Q7Z5H4 357 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 C1orf127Q8N9H9 656 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 LRRN4CLQ8ND94 238 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 NUDT16Q96DE0 195 aaKnown RBP3.78□□□□□ -1.8
LIMA1-207ENST00000551486 HRASLS5Q96KN8 279 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 ACSS3Q9H6R3 686 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 LMCD1Q9NZU5 365 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 AP4E1Q9UPM8 1137 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 DAGLAQ9Y4D2 1042 aa3.78□□□□□ -1.8
LIMA1-207ENST00000551486 TNFRSF10BO14763 440 aa3.77□□□□□ -1.81
LIMA1-207ENST00000551486 ESRRAP11474 423 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-207ENST00000551486 ACPPP15309 386 aa3.77□□□□□ -1.81
LIMA1-207ENST00000551486 NAA30Q147X3 362 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-207ENST00000551486 IFI16Q16666 785 aaKnown RBP3.77□□□□□ -1.81
LIMA1-207ENST00000551486 AOC3Q16853 763 aa3.77□□□□□ -1.81
LIMA1-207ENST00000551486 SLC23A3Q6PIS1 610 aa3.77□□□□□ -1.81
LIMA1-207ENST00000551486 TTLL10Q6ZVT0 673 aa3.77□□□□□ -1.81
LIMA1-207ENST00000551486 SYDE1Q6ZW31 735 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-207ENST00000551486 PLD6Q8N2A8 252 aaKnown RBP3.77□□□□□ -1.81
LIMA1-207ENST00000551486 FLAD1Q8NFF5 587 aa3.77□□□□□ -1.81
LIMA1-207ENST00000551486 KRTAP9-3Q9BYQ3 159 aa3.77□□□□□ -1.81
LIMA1-207ENST00000551486 ACIN1Q9UKV3 1341 aaKnown RBP3.76□□□□□ -1.81
LIMA1-207ENST00000551486 TMEM265A0A087WTH1 108 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 AFMP43652 599 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 CTSWP56202 376 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 POU4F3Q15319 338 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 C8orf34Q49A92 452 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 FAM26DQ5JW98 314 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 MPZL3Q6UWV2 235 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 LCNL1Q6ZST4 164 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 HHIPQ96QV1 700 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 MKNK1Q9BUB5 465 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 LGR6Q9HBX8 967 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 C1GALT1Q9NS00 363 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 FAM105AQ9NUU6 356 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 ADAMTS6Q9UKP5 1117 aa3.76□□□□□ -1.81
LIMA1-207ENST00000551486 NOVA2Q9UNW9 492 aaKnown RBP3.76□□□□□ -1.81
LIMA1-207ENST00000551486 FAM87AP0C7U9 286 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 MAOBP27338 520 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 HNRNPUQ00839 825 aaKnown RBP eCLIP3.75□□□□□ -1.81
LIMA1-207ENST00000551486 ECM1Q16610 540 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 SEZ6L2Q6UXD5 910 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 C1QL4Q86Z23 238 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 WFDC3Q8IUB2 231 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 CILP2Q8IUL8 1156 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 CORO1BQ9BR76 489 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 ZKSCAN3Q9BRR0 538 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 PIDD1Q9HB75 910 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 MKNK2Q9HBH9 465 aa3.75□□□□□ -1.81
LIMA1-207ENST00000551486 ZBTB39O15060 712 aa3.74□□□□□ -1.81
LIMA1-207ENST00000551486 TMEM253P0C7T8 217 aa3.74□□□□□ -1.81
LIMA1-207ENST00000551486 AMIGO3Q86WK7 504 aa3.74□□□□□ -1.81
LIMA1-207ENST00000551486 PROSER2Q86WR7 435 aaPredicted RBP3.74□□□□□ -1.81
LIMA1-207ENST00000551486 FAM181AQ8N9Y4 354 aa3.74□□□□□ -1.81
LIMA1-207ENST00000551486 EDEM1Q92611 657 aa3.74□□□□□ -1.81
LIMA1-207ENST00000551486 CSRNP1Q96S65 589 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms