RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 LAMC1P11047 1609 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 LTKP29376 864 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 TRIM28Q13263 835 aaKnown RBP8.16□□□□□ -1.1
SCAF11-213ENST00000550629 DIP2AQ14689 1571 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 KRT25Q7Z3Z0 450 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 PRAG1Q86YV5 1406 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 RGL4Q8IZJ4 473 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 PRDM6Q9NQX0 595 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 ZFATQ9P243 1243 aa8.16□□□□□ -1.1
SCAF11-213ENST00000550629 POLR1AO95602 1720 aaPredicted RBP8.15□□□□□ -1.1
SCAF11-213ENST00000550629 NPHP4O75161 1426 aaPredicted RBP8.15□□□□□ -1.1
SCAF11-213ENST00000550629 CARNS1A5YM72 827 aa8.15□□□□□ -1.1
SCAF11-213ENST00000550629 SASH3O75995 380 aa8.15□□□□□ -1.1
SCAF11-213ENST00000550629 TARSP26639 723 aaKnown RBP8.15□□□□□ -1.1
SCAF11-213ENST00000550629 SCNN1AP37088 669 aa8.15□□□□□ -1.1
SCAF11-213ENST00000550629 CMTR1Q8N1G2 835 aaKnown RBP8.15□□□□□ -1.1
SCAF11-213ENST00000550629 KRTAP4-7Q9BYR0 210 aa8.15□□□□□ -1.1
SCAF11-213ENST00000550629 C11orf16Q9NQ32 467 aa8.15□□□□□ -1.1
SCAF11-213ENST00000550629 TPSG1Q9NRR2 321 aa8.15□□□□□ -1.1
SCAF11-213ENST00000550629 DNAJB12Q9NXW2 375 aaKnown RBP8.15□□□□□ -1.1
SCAF11-213ENST00000550629 ADGRF5Q8IZF2 1346 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 HSPA2P54652 639 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 RSPO4Q2I0M5 234 aaPredicted RBP8.14□□□□□ -1.11
SCAF11-213ENST00000550629 C8orf86Q6ZUL3 223 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 MICALL1Q8N3F8 863 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 ARID3AQ99856 593 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 C14orf93Q9H972 538 aaKnown RBP8.14□□□□□ -1.11
SCAF11-213ENST00000550629 SLC6A14Q9UN76 642 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 TBX22Q9Y458 520 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 KCNMB2Q9Y691 235 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 KIAA1210Q9ULL0 1709 aa8.14□□□□□ -1.11
SCAF11-213ENST00000550629 PIK3R4Q99570 1358 aa8.13□□□□□ -1.11
SCAF11-213ENST00000550629 MAP3K6O95382 1288 aa8.13□□□□□ -1.11
SCAF11-213ENST00000550629 EGFRP00533 1210 aa8.13□□□□□ -1.11
SCAF11-213ENST00000550629 C20orf204Q6ZNR8 217 aa8.13□□□□□ -1.11
SCAF11-213ENST00000550629 STIM2Q9P246 746 aa8.13□□□□□ -1.11
SCAF11-213ENST00000550629 IQGAP1P46940 1657 aa8.13□□□□□ -1.11
SCAF11-213ENST00000550629 RALGAPBQ86X10 1494 aa8.13□□□□□ -1.11
SCAF11-213ENST00000550629 ADAMTS13Q76LX8 1427 aa8.12□□□□□ -1.11
SCAF11-213ENST00000550629 ALKQ9UM73 1620 aa8.12□□□□□ -1.11
SCAF11-213ENST00000550629 NRXN3Q9Y4C0 1643 aa8.12□□□□□ -1.11
SCAF11-213ENST00000550629 ZBTB39O15060 712 aa8.12□□□□□ -1.11
SCAF11-213ENST00000550629 XYLBO75191 536 aa8.12□□□□□ -1.11
SCAF11-213ENST00000550629 SSFA2P28290 1259 aa8.12□□□□□ -1.11
SCAF11-213ENST00000550629 COL9A3Q14050 684 aaPredicted RBP8.12□□□□□ -1.11
SCAF11-213ENST00000550629 STRCQ7RTU9 1775 aa8.12□□□□□ -1.11
SCAF11-213ENST00000550629 GPRASP1Q5JY77 1395 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 DYRK3O43781 588 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 LILRB5O75023 590 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 RARAP10276 462 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 NID1P14543 1247 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 ZAP70P43403 619 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 NKAPLQ5M9Q1 402 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 TRAPPC3LQ5T215 181 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 DHX32Q7L7V1 743 aaKnown RBP8.11□□□□□ -1.11
SCAF11-213ENST00000550629 TRPM1Q7Z4N2 1603 aa8.11□□□□□ -1.11
SCAF11-213ENST00000550629 ADGRB1O14514 1584 aa8.1□□□□□ -1.11
SCAF11-213ENST00000550629 ZBTB42B2RXF5 422 aa8.1□□□□□ -1.11
SCAF11-213ENST00000550629 GRIK4Q16099 956 aa8.1□□□□□ -1.11
SCAF11-213ENST00000550629 NBPF8Q3BBV2 869 aa8.1□□□□□ -1.11
SCAF11-213ENST00000550629 NAGPAQ9UK23 515 aa8.1□□□□□ -1.11
SCAF11-213ENST00000550629 SETD1AO15047 1707 aaKnown RBP8.09□□□□□ -1.11
SCAF11-213ENST00000550629 RAC1P63000 192 aa8.09□□□□□ -1.11
SCAF11-213ENST00000550629 TRIP4Q15650 581 aaPredicted RBP8.09□□□□□ -1.11
SCAF11-213ENST00000550629 PHLDB3Q6NSJ2 640 aa8.09□□□□□ -1.11
SCAF11-213ENST00000550629 NUDT8Q8WV74 236 aa8.09□□□□□ -1.11
SCAF11-213ENST00000550629 PIK3R5Q8WYR1 880 aa8.09□□□□□ -1.11
SCAF11-213ENST00000550629 TECPR2O15040 1411 aa8.09□□□□□ -1.11
SCAF11-213ENST00000550629 ROCK2O75116 1388 aaKnown RBP8.09□□□□□ -1.12
SCAF11-213ENST00000550629 METP08581 1390 aa8.09□□□□□ -1.12
SCAF11-213ENST00000550629 LRPPRCP42704 1394 aaKnown RBP8.09□□□□□ -1.12
SCAF11-213ENST00000550629 ABCC11Q96J66 1382 aa8.09□□□□□ -1.12
SCAF11-213ENST00000550629 C9orf172C9J069 976 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 CPB1P15086 417 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 MLLT1Q03111 559 aaPredicted RBP8.08□□□□□ -1.12
SCAF11-213ENST00000550629 PCSK7Q16549 785 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 PSAPL1Q6NUJ1 521 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 FAM35AQ86V20 835 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 ABTB2Q8N961 1025 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 TRPM4Q8TD43 1214 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 HELQQ8TDG4 1101 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 GPR152Q8TDT2 470 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 GTF3C2Q8WUA4 911 aaPredicted RBP8.08□□□□□ -1.12
SCAF11-213ENST00000550629 SLC26A8Q96RN1 970 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 JPH1Q9HDC5 661 aaPredicted RBP8.08□□□□□ -1.12
SCAF11-213ENST00000550629 FAM13BQ9NYF5 915 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 YTHDC2Q9H6S0 1430 aaKnown RBP8.08□□□□□ -1.12
SCAF11-213ENST00000550629 ASXL1Q8IXJ9 1541 aa8.08□□□□□ -1.12
SCAF11-213ENST00000550629 NKTRP30414 1462 aaKnown RBP8.07□□□□□ -1.12
SCAF11-213ENST00000550629 NWD1Q149M9 1564 aa8.07□□□□□ -1.12
SCAF11-213ENST00000550629 PTCH1Q13635 1447 aa8.07□□□□□ -1.12
SCAF11-213ENST00000550629 MMP20O60882 483 aa8.07□□□□□ -1.12
SCAF11-213ENST00000550629 ATCAYQ86WG3 371 aa8.07□□□□□ -1.12
SCAF11-213ENST00000550629 GOLGA2P5Q9HBQ8 144 aa8.07□□□□□ -1.12
SCAF11-213ENST00000550629 TLR7Q9NYK1 1049 aaKnown RBP8.07□□□□□ -1.12
SCAF11-213ENST00000550629 DLC1Q96QB1 1528 aa8.07□□□□□ -1.12
SCAF11-213ENST00000550629 EIF3AQ14152 1382 aaKnown RBP8.07□□□□□ -1.12
SCAF11-213ENST00000550629 XRN1Q8IZH2 1706 aaKnown RBP8.06□□□□□ -1.12
SCAF11-213ENST00000550629 FAM135BQ49AJ0 1406 aa8.06□□□□□ -1.12
SCAF11-213ENST00000550629 UBAP1LF5GYI3 381 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms