RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 UBTFP17480 764 aaKnown RBP6.09□□□□□ -1.43
LIMA1-206ENST00000550611 PIK3R5Q8WYR1 880 aa6.09□□□□□ -1.43
LIMA1-206ENST00000550611 METTL22Q9BUU2 404 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-206ENST00000550611 OSBPL1AQ9BXW6 950 aa6.09□□□□□ -1.43
LIMA1-206ENST00000550611 KRTAP4-11Q9BYQ6 195 aa6.09□□□□□ -1.43
LIMA1-206ENST00000550611 BSDC1Q9NW68 430 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-206ENST00000550611 FAM13BQ9NYF5 915 aa6.09□□□□□ -1.43
LIMA1-206ENST00000550611 GOLGA3Q08378 1498 aa6.09□□□□□ -1.44
LIMA1-206ENST00000550611 GAS2O43903 313 aaKnown RBP6.08□□□□□ -1.44
LIMA1-206ENST00000550611 SCNN1AP37088 669 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 COL19A1Q14993 1142 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 TTC39BQ5VTQ0 682 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-206ENST00000550611 TP53INP2Q8IXH6 220 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 CEP120Q8N960 986 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 GLMNQ92990 594 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 POP1Q99575 1024 aaKnown RBP6.08□□□□□ -1.44
LIMA1-206ENST00000550611 RUSC1Q9BVN2 902 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 FRMPD1Q5SYB0 1578 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 PRXQ9BXM0 1461 aa6.08□□□□□ -1.44
LIMA1-206ENST00000550611 BRD2P25440 801 aaKnown RBP6.07□□□□□ -1.44
LIMA1-206ENST00000550611 CABP4P57796 275 aa6.07□□□□□ -1.44
LIMA1-206ENST00000550611 FLIIQ13045 1269 aa6.07□□□□□ -1.44
LIMA1-206ENST00000550611 AGBL5Q8NDL9 886 aa6.07□□□□□ -1.44
LIMA1-206ENST00000550611 FNDC3AQ9Y2H6 1198 aaKnown RBP6.07□□□□□ -1.44
LIMA1-206ENST00000550611 IQSEC2Q5JU85 1478 aa6.07□□□□□ -1.44
LIMA1-206ENST00000550611 FBLN7Q53RD9 439 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 SGO2Q562F6 1265 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 FBXL6Q8N531 539 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 PPP1R12CQ9BZL4 782 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 ZMYND15Q9H091 742 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 VRTNQ9H8Y1 702 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 ABI2Q9NYB9 513 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-206ENST00000550611 UHRF1BP1Q6BDS2 1440 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 POGZQ7Z3K3 1410 aa6.06□□□□□ -1.44
LIMA1-206ENST00000550611 PREX1Q8TCU6 1659 aa6.05□□□□□ -1.44
LIMA1-206ENST00000550611 NEO1Q92859 1461 aa6.05□□□□□ -1.44
LIMA1-206ENST00000550611 A6NJR5 290 aa6.05□□□□□ -1.44
LIMA1-206ENST00000550611 TOM1O60784 492 aa6.05□□□□□ -1.44
LIMA1-206ENST00000550611 FKBP5Q13451 457 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-206ENST00000550611 SUGCTQ9HAC7 445 aa6.05□□□□□ -1.44
LIMA1-206ENST00000550611 FAM95CA0A1B0GW59 222 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 DBX1A6NMT0 343 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 CYP26A1O43174 497 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 TIAF1O95411 115 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 RXRBP28702 533 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 NLRP12P59046 1061 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 C16orf46Q6P387 395 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 PAOXQ6QHF9 649 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 NCAPG2Q86XI2 1143 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 SMG8Q8ND04 991 aaKnown RBP6.04□□□□□ -1.44
LIMA1-206ENST00000550611 TMPRSS13Q9BYE2 586 aa6.04□□□□□ -1.44
LIMA1-206ENST00000550611 PAK6Q9NQU5 681 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-206ENST00000550611 FER1L4A9Z1Z3 1794 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 FHOD3Q2V2M9 1422 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 AKNAQ7Z591 1439 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 PAPLNO95428 1278 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 NUTM2GQ5VZR2 741 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 SPOCD1Q6ZMY3 1216 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 FAM9AQ8IZU1 332 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-206ENST00000550611 FLCNQ8NFG4 579 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 FAM200AQ8TCP9 573 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 SAP130Q9H0E3 1048 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 ABCA9Q8IUA7 1624 aa6.03□□□□□ -1.44
LIMA1-206ENST00000550611 FANCAO15360 1455 aa6.02□□□□□ -1.44
LIMA1-206ENST00000550611 TTC37Q6PGP7 1564 aa6.02□□□□□ -1.45
LIMA1-206ENST00000550611 NCOA1Q15788 1441 aa6.02□□□□□ -1.45
LIMA1-206ENST00000550611 CYP2E1P05181 493 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-206ENST00000550611 ARL4DP49703 201 aa6.02□□□□□ -1.45
LIMA1-206ENST00000550611 C19orf57Q0VDD7 668 aa6.02□□□□□ -1.45
LIMA1-206ENST00000550611 FAM26DQ5JW98 314 aa6.02□□□□□ -1.45
LIMA1-206ENST00000550611 C12orf50Q8NA57 414 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-206ENST00000550611 CYP4F12Q9HCS2 524 aa6.02□□□□□ -1.45
LIMA1-206ENST00000550611 DENND4BO75064 1496 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-206ENST00000550611 ARHGEF40Q8TER5 1519 aa6.01□□□□□ -1.45
LIMA1-206ENST00000550611 SETD1BQ9UPS6 1966 aaKnown RBP6.01□□□□□ -1.45
LIMA1-206ENST00000550611 PLEKHD1A6NEE1 506 aa6.01□□□□□ -1.45
LIMA1-206ENST00000550611 TNFRSF10BO14763 440 aa6.01□□□□□ -1.45
LIMA1-206ENST00000550611 ZAP70P43403 619 aa6.01□□□□□ -1.45
LIMA1-206ENST00000550611 ZNF648Q5T619 568 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-206ENST00000550611 PDE12Q6L8Q7 609 aaKnown RBP6.01□□□□□ -1.45
LIMA1-206ENST00000550611 ZAR1Q86SH2 424 aa6.01□□□□□ -1.45
LIMA1-206ENST00000550611 SHISA5Q8N114 240 aa6.01□□□□□ -1.45
LIMA1-206ENST00000550611 ARHGEF12Q9NZN5 1544 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 SETD1AO15047 1707 aaKnown RBP6□□□□□ -1.45
LIMA1-206ENST00000550611 NFKBIEO00221 500 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 BIN1O00499 593 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 NFKBIBQ15653 356 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 FNBP4Q8N3X1 1017 aaPredicted RBP6□□□□□ -1.45
LIMA1-206ENST00000550611 SLC7A3Q8WY07 619 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 EZH1Q92800 747 aaPredicted RBP6□□□□□ -1.45
LIMA1-206ENST00000550611 KRTAP4-5Q9BYR2 181 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 PRKAG2Q9UGJ0 569 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 SOX13Q9UN79 622 aa6□□□□□ -1.45
LIMA1-206ENST00000550611 NUP153P49790 1475 aaKnown RBP6□□□□□ -1.45
LIMA1-206ENST00000550611 LMOD1P29536 600 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-206ENST00000550611 ADMP35318 185 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 USP11P51784 963 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 OCLNQ16625 522 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 SWI5Q1ZZU3 235 aa5.99□□□□□ -1.45
LIMA1-206ENST00000550611 GATA6Q92908 595 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms