RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 ARHGEF2Q92974 986 aaKnown RBP11.68□□□□□ -0.54
PCDH9-204ENST00000544246 DHX58Q96C10 678 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 ZMYM3Q14202 1370 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 ABCA5Q8WWZ7 1642 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 ATP10AO60312 1499 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 KIFAP3Q92845 792 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 C8orf37Q96NL8 207 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 STX8Q9UNK0 236 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 AKNAD1Q5T1N1 836 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 SRGAP1Q7Z6B7 1085 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 KRT79Q5XKE5 535 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 RNF34Q969K3 372 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 HVCN1Q96D96 273 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 CCDC94Q9BW85 323 aaPredicted RBP11.68□□□□□ -0.54
PCDH9-204ENST00000544246 HDAC9Q9UKV0 1011 aa11.68□□□□□ -0.54
PCDH9-204ENST00000544246 PCF11O94913 1555 aaKnown RBP11.68□□□□□ -0.54
PCDH9-204ENST00000544246 ST5P78524 1137 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 POTEDQ86YR6 584 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 WDR46O15213 610 aaKnown RBP11.67□□□□□ -0.54
PCDH9-204ENST00000544246 PPFIA3O75145 1194 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 LEO1Q8WVC0 666 aaPredicted RBP11.67□□□□□ -0.54
PCDH9-204ENST00000544246 LZTFL1Q9NQ48 299 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 AFG3L2Q9Y4W6 797 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 DAPK1P53355 1430 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 PTPRCP08575 1304 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 KRT5P13647 590 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 GABPAQ06546 454 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 KRBA2Q6ZNG9 492 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 PPP1R42Q7Z4L9 355 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 ESR2Q92731 530 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 PROCA1Q8NCQ7 364 aaPredicted RBP11.67□□□□□ -0.54
PCDH9-204ENST00000544246 TSPYL2Q9H2G4 693 aaPredicted RBP11.67□□□□□ -0.54
PCDH9-204ENST00000544246 CNPY2Q9Y2B0 182 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 HFM1A2PYH4 1435 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 UHRF1BP1LA0JNW5 1464 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.67□□□□□ -0.54
PCDH9-204ENST00000544246 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.67□□□□□ -0.54
PCDH9-204ENST00000544246 RILPL1Q5EBL4 403 aa11.67□□□□□ -0.54
PCDH9-204ENST00000544246 PPANQ9NQ55 473 aaKnown RBP11.67□□□□□ -0.54
PCDH9-204ENST00000544246 HPDP32754 393 aaPredicted RBP11.66□□□□□ -0.54
PCDH9-204ENST00000544246 WDR44Q5JSH3 913 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 MPRIPQ6WCQ1 1025 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 ZGPATQ8N5A5 531 aaKnown RBP11.66□□□□□ -0.54
PCDH9-204ENST00000544246 DNAJC25Q9H1X3 360 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 SPDYE3A6NKU9 549 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 PPFIA2O75334 1257 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 GPTP24298 496 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 SLC8A3P57103 927 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 LDHAL6AQ6ZMR3 332 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 VCX3AQ9NNX9 186 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 SNRKQ9NRH2 765 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 TXNDC9O14530 226 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 RAPGEF1Q13905 1077 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 TAOK1Q7L7X3 1001 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 ZNF622Q969S3 477 aaKnown RBP eCLIP11.66□□□□□ -0.54
PCDH9-204ENST00000544246 OGFRQ9NZT2 677 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 SLC4A4Q9Y6R1 1079 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 RRP36Q96EU6 259 aaKnown RBP11.66□□□□□ -0.54
PCDH9-204ENST00000544246 UTP11Q9Y3A2 253 aaKnown RBP11.66□□□□□ -0.54
PCDH9-204ENST00000544246 RTL9Q8NET4 1388 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 ABCC11Q96J66 1382 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 I3L4J1 428 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 STX10O60499 249 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 KRT2P35908 639 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 PLS1Q14651 629 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 TBC1D9Q6ZT07 1266 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 SUDS3Q9H7L9 328 aaPredicted RBP11.66□□□□□ -0.54
PCDH9-204ENST00000544246 DBF4Q9UBU7 674 aaPredicted RBP11.66□□□□□ -0.54
PCDH9-204ENST00000544246 MAP3K2Q9Y2U5 619 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 NSD3Q9BZ95 1437 aa11.66□□□□□ -0.54
PCDH9-204ENST00000544246 F6X3S4 739 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 ATP2B3Q16720 1220 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 RNF168Q8IYW5 571 aaPredicted RBP11.65□□□□□ -0.54
PCDH9-204ENST00000544246 MRRFQ96E11 262 aaKnown RBP11.65□□□□□ -0.54
PCDH9-204ENST00000544246 ANKFY1Q9P2R3 1169 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 DAPK3O43293 454 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 FOXO3O43524 673 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 ACTN4O43707 911 aaKnown RBP11.65□□□□□ -0.54
PCDH9-204ENST00000544246 BIRC2Q13490 618 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 MARCKSP29966 332 aaPredicted RBP11.65□□□□□ -0.54
PCDH9-204ENST00000544246 BCAP29Q9UHQ4 241 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 RIMBP3CA6NJZ7 1639 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 RIMBP3BA6NNM3 1639 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 RIMBP3Q9UFD9 1639 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 SYT10Q6XYQ8 523 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 USP48Q86UV5 1035 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 BRF1Q92994 677 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 FRMD4BQ9Y2L6 1034 aa11.65□□□□□ -0.54
PCDH9-204ENST00000544246 RIOK3O14730 519 aaKnown RBP11.65□□□□□ -0.55
PCDH9-204ENST00000544246 SPOPO43791 374 aa11.65□□□□□ -0.55
PCDH9-204ENST00000544246 IRX5P78411 483 aaPredicted RBP11.65□□□□□ -0.55
PCDH9-204ENST00000544246 CCDC38Q502W7 563 aa11.65□□□□□ -0.55
PCDH9-204ENST00000544246 CCDC122Q5T0U0 273 aa11.65□□□□□ -0.55
PCDH9-204ENST00000544246 LIN9Q5TKA1 542 aa11.65□□□□□ -0.55
PCDH9-204ENST00000544246 TEX13AQ9BXU3 409 aaPredicted RBP11.65□□□□□ -0.55
PCDH9-204ENST00000544246 RPL13P26373 211 aaKnown RBP11.64□□□□□ -0.55
PCDH9-204ENST00000544246 DCAF17Q5H9S7 520 aaPredicted RBP11.64□□□□□ -0.55
PCDH9-204ENST00000544246 HHATQ5VTY9 493 aa11.64□□□□□ -0.55
PCDH9-204ENST00000544246 INPP5BP32019 993 aa11.64□□□□□ -0.55
PCDH9-204ENST00000544246 KRT9P35527 623 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms