RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GYG1P46976 350 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 CYB5R4Q7L1T6 521 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 ZSCAN16Q9H4T2 348 aaPredicted RBP19.17■□□□□ 0.66
COL4A1-204ENST00000543140 HPS5Q9UPZ3 1129 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 B4E1Z4 1266 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 CAMK4Q16566 473 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 NAA16Q6N069 864 aaPredicted RBP19.17■□□□□ 0.66
COL4A1-204ENST00000543140 LRP2BPQ9P2M1 347 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 KIF3AQ9Y496 699 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 DOCK2Q92608 1830 aa19.17■□□□□ 0.66
COL4A1-204ENST00000543140 PRKAB2O43741 272 aa19.16■□□□□ 0.66
COL4A1-204ENST00000543140 FTOQ9C0B1 505 aaKnown RBP eCLIP19.16■□□□□ 0.66
COL4A1-204ENST00000543140 EPB41L4AQ9HCS5 686 aaPredicted RBP19.16■□□□□ 0.66
COL4A1-204ENST00000543140 CARMIL3Q8ND23 1372 aa19.16■□□□□ 0.66
COL4A1-204ENST00000543140 BTAF1O14981 1849 aa19.16■□□□□ 0.66
COL4A1-204ENST00000543140 CASZ1Q86V15 1759 aa19.16■□□□□ 0.66
COL4A1-204ENST00000543140 IFNL3Q8IZI9 196 aa19.16■□□□□ 0.66
COL4A1-204ENST00000543140 MIGA1Q8NAN2 632 aa19.16■□□□□ 0.66
COL4A1-204ENST00000543140 CELF1Q92879 486 aaKnown RBP19.16■□□□□ 0.66
COL4A1-204ENST00000543140 PATL2C9JE40 543 aaKnown RBP19.15■□□□□ 0.66
COL4A1-204ENST00000543140 CTDSPL2Q05D32 466 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 SF3B3Q15393 1217 aaKnown RBP19.15■□□□□ 0.66
COL4A1-204ENST00000543140 OTUD7BQ6GQQ9 843 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 AMIGO3Q86WK7 504 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 PGBD1Q96JS3 809 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 PDLIM2Q96JY6 352 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 NAPBQ9H115 298 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 ABCF2Q9UG63 623 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 CCNL1Q9UK58 526 aaPredicted RBP19.15■□□□□ 0.66
COL4A1-204ENST00000543140 NEDD4P46934 1319 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 ZNF831Q5JPB2 1677 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 LCORLQ8N3X6 602 aa19.15■□□□□ 0.66
COL4A1-204ENST00000543140 RXRAP19793 462 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 STK11IPQ8N1F8 1099 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 SETDB2Q96T68 719 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 SENP2Q9HC62 589 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 DACT1Q9NYF0 836 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 NARFQ9UHQ1 456 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 CPLX1O14810 134 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 ZPR1O75312 459 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 RPS6KA4O75676 772 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 ADD1P35611 737 aaKnown RBP19.14■□□□□ 0.65
COL4A1-204ENST00000543140 BSDC1Q9NW68 430 aaPredicted RBP19.14■□□□□ 0.65
COL4A1-204ENST00000543140 CFAP45Q9UL16 551 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 TAOK2Q9UL54 1235 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 ANGEL1Q9UNK9 670 aaKnown RBP19.14■□□□□ 0.65
COL4A1-204ENST00000543140 MINPP1Q9UNW1 487 aa19.14■□□□□ 0.65
COL4A1-204ENST00000543140 GSG1L2A8MUP6 293 aa19.13■□□□□ 0.65
COL4A1-204ENST00000543140 NBPF5PQ86XG9 351 aaPredicted RBP19.13■□□□□ 0.65
COL4A1-204ENST00000543140 BICD2Q8TD16 824 aa19.13■□□□□ 0.65
COL4A1-204ENST00000543140 GJB4Q9NTQ9 266 aa19.13■□□□□ 0.65
COL4A1-204ENST00000543140 MYH15Q9Y2K3 1946 aa19.13■□□□□ 0.65
COL4A1-204ENST00000543140 DHX16O60231 1041 aaKnown RBP19.13■□□□□ 0.65
COL4A1-204ENST00000543140 SLC4A4Q9Y6R1 1079 aa19.13■□□□□ 0.65
COL4A1-204ENST00000543140 CHMP4CQ96CF2 233 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 FUCA2Q9BTY2 467 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 NUP62CLQ9H1M0 184 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 ORC3Q9UBD5 711 aaPredicted RBP19.12■□□□□ 0.65
COL4A1-204ENST00000543140 WDR19Q8NEZ3 1342 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 ALX1Q15699 326 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 ADGRA1Q86SQ6 560 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 VPS37DQ86XT2 251 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 CCDC144CPQ8IYA2 1237 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 TACC3Q9Y6A5 838 aa19.12■□□□□ 0.65
COL4A1-204ENST00000543140 CHD4Q14839 1912 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 CYP7A1P22680 504 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 TDO2P48775 406 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 RC3H1Q5TC82 1133 aaKnown RBP19.11■□□□□ 0.65
COL4A1-204ENST00000543140 ILDR1Q86SU0 546 aaPredicted RBP19.11■□□□□ 0.65
COL4A1-204ENST00000543140 CKAP2LQ8IYA6 745 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 USP28Q96RU2 1077 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 RAI14Q9P0K7 980 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 RTCBQ9Y3I0 505 aaKnown RBP19.11■□□□□ 0.65
COL4A1-204ENST00000543140 SCN7AQ01118 1682 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 SH2B2O14492 632 aaPredicted RBP19.11■□□□□ 0.65
COL4A1-204ENST00000543140 KDM4AO75164 1064 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 NR1I2O75469 434 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 CLCN1P35523 988 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 SLC10A5Q5PT55 438 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 C8orf76Q96K31 380 aa19.11■□□□□ 0.65
COL4A1-204ENST00000543140 UBE4AQ14139 1066 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 RRP12Q5JTH9 1297 aaKnown RBP19.1■□□□□ 0.65
COL4A1-204ENST00000543140 MICU3Q86XE3 530 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 ARHGEF1Q92888 912 aaKnown RBP19.1■□□□□ 0.65
COL4A1-204ENST00000543140 NLRP3Q96P20 1036 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 TOMM22Q9NS69 142 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 GNL3LQ9NVN8 582 aaKnown RBP19.1■□□□□ 0.65
COL4A1-204ENST00000543140 ZSWIM5Q9P217 1185 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 A0A1B0GUL6 1792 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 KLRK1P26718 216 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 CAVIN4Q5BKX8 364 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 MEX3CQ5U5Q3 659 aaKnown RBP19.1■□□□□ 0.65
COL4A1-204ENST00000543140 NFXL1Q6ZNB6 911 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 MYL10Q9BUA6 226 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 TNMDQ9H2S6 317 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 USP25Q9UHP3 1055 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 ZNF804BA4D1E1 1349 aa19.1■□□□□ 0.65
COL4A1-204ENST00000543140 RPS8P62241 208 aaKnown RBP19.09■□□□□ 0.65
COL4A1-204ENST00000543140 MAP3K11Q16584 847 aa19.09■□□□□ 0.65
COL4A1-204ENST00000543140 TMEM67Q5HYA8 995 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms