RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SHKBP1Q8TBC3 707 aa7.04□□□□□ -1.28
VPS13A-213ENST00000539950 CCER1Q8TC90 406 aaPredicted RBP7.04□□□□□ -1.28
VPS13A-213ENST00000539950 CCDC74AQ96AQ1 378 aa7.04□□□□□ -1.28
VPS13A-213ENST00000539950 PSMG3-AS1Q96PY0 264 aa7.04□□□□□ -1.28
VPS13A-213ENST00000539950 ZNF576Q9H609 170 aa7.04□□□□□ -1.28
VPS13A-213ENST00000539950 SOWAHDA6NJG2 315 aa7.03□□□□□ -1.28
VPS13A-213ENST00000539950 KIAA1324LA8MWY0 1029 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-213ENST00000539950 ECEL1O95672 775 aa7.03□□□□□ -1.28
VPS13A-213ENST00000539950 ITPKAP23677 461 aa7.03□□□□□ -1.28
VPS13A-213ENST00000539950 PDE4CQ08493 712 aa7.03□□□□□ -1.28
VPS13A-213ENST00000539950 C2CD4AQ8NCU7 369 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-213ENST00000539950 MFSD14AQ96MC6 490 aa7.03□□□□□ -1.28
VPS13A-213ENST00000539950 TRIM56Q9BRZ2 755 aaKnown RBP7.03□□□□□ -1.28
VPS13A-213ENST00000539950 B3GALT4O96024 378 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 RXRBP28702 533 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 SOX4Q06945 474 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-213ENST00000539950 POU4F3Q15319 338 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 CDPF1Q6NVV7 123 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 FBLIM1Q8WUP2 373 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 CSRNP1Q96S65 589 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 RBCK1Q9BYM8 510 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 DNAJC25Q9H1X3 360 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 ABCB6Q9NP58 842 aa7.02□□□□□ -1.29
VPS13A-213ENST00000539950 WDR64B1ANS9 1081 aa7.01□□□□□ -1.29
VPS13A-213ENST00000539950 ADAMTS4O75173 837 aa7.01□□□□□ -1.29
VPS13A-213ENST00000539950 CYP11A1P05108 521 aa7.01□□□□□ -1.29
VPS13A-213ENST00000539950 SHISA5Q8N114 240 aa7.01□□□□□ -1.29
VPS13A-213ENST00000539950 GLIS3Q8NEA6 775 aa7.01□□□□□ -1.29
VPS13A-213ENST00000539950 EIF4EBP3O60516 100 aaPredicted RBP7□□□□□ -1.29
VPS13A-213ENST00000539950 GADD45BO75293 160 aaPredicted RBP7□□□□□ -1.29
VPS13A-213ENST00000539950 ADH5P11766 374 aa7□□□□□ -1.29
VPS13A-213ENST00000539950 USP11P51784 963 aa7□□□□□ -1.29
VPS13A-213ENST00000539950 PRPF40BQ6NWY9 871 aaKnown RBP7□□□□□ -1.29
VPS13A-213ENST00000539950 TMC7Q7Z402 723 aa7□□□□□ -1.29
VPS13A-213ENST00000539950 EPS8L3Q8TE67 593 aaKnown RBP7□□□□□ -1.29
VPS13A-213ENST00000539950 ALKBH8Q96BT7 664 aaKnown RBP7□□□□□ -1.29
VPS13A-213ENST00000539950 DMRTB1Q96MA1 342 aa7□□□□□ -1.29
VPS13A-213ENST00000539950 FAM95CA0A1B0GW59 222 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 F13BP05160 661 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 SPINK2P20155 84 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 GRM2Q14416 872 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 NFKBIBQ15653 356 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 KRTAP1-3Q8IUG1 177 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 FBXL6Q8N531 539 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 CORO1BQ9BR76 489 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 BIN2Q9UBW5 565 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-213ENST00000539950 GNEQ9Y223 722 aaKnown RBP6.99□□□□□ -1.29
VPS13A-213ENST00000539950 ACTL7BQ9Y614 415 aa6.99□□□□□ -1.29
VPS13A-213ENST00000539950 TMEM238LA0A1B0GVL6 79 aa6.98□□□□□ -1.29
VPS13A-213ENST00000539950 HOXA10P31260 410 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-213ENST00000539950 GRIK1P39086 918 aa6.98□□□□□ -1.29
VPS13A-213ENST00000539950 PTPN12Q05209 780 aaKnown RBP6.98□□□□□ -1.29
VPS13A-213ENST00000539950 FAAP100Q0VG06 881 aa6.98□□□□□ -1.29
VPS13A-213ENST00000539950 AKAP4Q5JQC9 854 aa6.98□□□□□ -1.29
VPS13A-213ENST00000539950 INTS5Q6P9B9 1019 aaKnown RBP6.98□□□□□ -1.29
VPS13A-213ENST00000539950 PI16Q6UXB8 463 aa6.98□□□□□ -1.29
VPS13A-213ENST00000539950 BRD1O95696 1058 aa6.97□□□□□ -1.29
VPS13A-213ENST00000539950 ADMP35318 185 aa6.97□□□□□ -1.29
VPS13A-213ENST00000539950 ZNF157P51786 506 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-213ENST00000539950 PAOXQ6QHF9 649 aa6.97□□□□□ -1.29
VPS13A-213ENST00000539950 DTX1Q86Y01 620 aa6.97□□□□□ -1.29
VPS13A-213ENST00000539950 DDX54Q8TDD1 881 aaKnown RBP6.97□□□□□ -1.29
VPS13A-213ENST00000539950 EZH1Q92800 747 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-213ENST00000539950 PIM2Q9P1W9 311 aa6.97□□□□□ -1.29
VPS13A-213ENST00000539950 DYMQ7RTS9 669 aa6.96□□□□□ -1.3
VPS13A-213ENST00000539950 RAD18Q9NS91 495 aa6.96□□□□□ -1.3
VPS13A-213ENST00000539950 ATG3Q9NT62 314 aa6.96□□□□□ -1.3
VPS13A-213ENST00000539950 FAM105AQ9NUU6 356 aa6.96□□□□□ -1.3
VPS13A-213ENST00000539950 DCTN4Q9UJW0 460 aa6.96□□□□□ -1.3
VPS13A-213ENST00000539950 TRAK1Q9UPV9 953 aa6.96□□□□□ -1.3
VPS13A-213ENST00000539950 OAS3Q9Y6K5 1087 aaKnown RBP6.96□□□□□ -1.3
VPS13A-213ENST00000539950 AOC2O75106 756 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 NFICP08651 508 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 RAB6AP20340 208 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 GP2P55259 537 aaKnown RBP6.95□□□□□ -1.3
VPS13A-213ENST00000539950 AP3B2Q13367 1082 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 PDE3AQ14432 1141 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 RPS26P11Q5JNZ5 115 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-213ENST00000539950 HP1BP3Q5SSJ5 553 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-213ENST00000539950 WDR18Q9BV38 432 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 OSBPL1AQ9BXW6 950 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 SEMA6CQ9H3T2 930 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 ZFYVE1Q9HBF4 777 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 PRKAG2Q9UGJ0 569 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 AP4E1Q9UPM8 1137 aa6.95□□□□□ -1.3
VPS13A-213ENST00000539950 MAPK1P28482 360 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 FCGRTP55899 365 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 DSC3Q14574 896 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 ZAR1Q86SH2 424 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 GIMAP7Q8NHV1 300 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 GATA6Q92908 595 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 WDR89Q96FK6 387 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-213ENST00000539950 TBC1D32Q96NH3 1257 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 YIPF2Q9BWQ6 316 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 GSX1Q9H4S2 264 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-213ENST00000539950 CCDC86Q9H6F5 360 aaKnown RBP6.94□□□□□ -1.3
VPS13A-213ENST00000539950 PPP1R9AQ9ULJ8 1098 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 LEMD3Q9Y2U8 911 aa6.94□□□□□ -1.3
VPS13A-213ENST00000539950 ASPAP45381 313 aa6.93□□□□□ -1.3
VPS13A-213ENST00000539950 DTHD1Q6ZMT9 781 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms