RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 NLRP2Q9NX02 1062 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 PPME1Q9Y570 386 aa5.1□□□□□ -1.59
CD44-229ENST00000528672 A0A096LPE4 126 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 TMEM238LA0A1B0GVL6 79 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 A0A1W2PPZ6 126 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 PDE2AO00408 941 aaPredicted RBP5.09□□□□□ -1.59
CD44-229ENST00000528672 DLL1O00548 723 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 DDX3YO15523 660 aaKnown RBP5.09□□□□□ -1.59
CD44-229ENST00000528672 CTSBP07858 339 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 CDC27P30260 824 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 RAD51AP2Q09MP3 1159 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 KIAA0319Q5VV43 1072 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 VN1R5Q7Z5H4 357 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 DMRTC2Q8IXT2 367 aaPredicted RBP5.09□□□□□ -1.59
CD44-229ENST00000528672 TMEM130Q8N3G9 435 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 IL22RA1Q8N6P7 574 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 KLHL23Q8NBE8 558 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 KRTAP9-9Q9BYP9 154 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 KRTAP9-4Q9BYQ2 154 aa5.09□□□□□ -1.59
CD44-229ENST00000528672 H3BRJ5 948 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 LINC01387J3KSC0 135 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 TM4SF5O14894 197 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 EIF4BP23588 611 aaKnown RBP5.08□□□□□ -1.6
CD44-229ENST00000528672 CDK8P49336 464 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 CABP4P57796 275 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 RACK1P63244 317 aaKnown RBP5.08□□□□□ -1.6
CD44-229ENST00000528672 PIP4K2BP78356 416 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 FANCCQ00597 558 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 SETDB1Q15047 1291 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 FAM117BQ6P1L5 589 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 C8orf37Q96NL8 207 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 MRPL18Q9H0U6 180 aaKnown RBP5.08□□□□□ -1.6
CD44-229ENST00000528672 SOX17Q9H6I2 414 aaPredicted RBP5.08□□□□□ -1.6
CD44-229ENST00000528672 MRS2Q9HD23 443 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 TPSG1Q9NRR2 321 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 KCNK4Q9NYG8 393 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 TLR6Q9Y2C9 796 aa5.08□□□□□ -1.6
CD44-229ENST00000528672 BTBD11A6QL63 1104 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 DEAF1O75398 565 aaPredicted RBP5.07□□□□□ -1.6
CD44-229ENST00000528672 SELPP16109 830 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 PTPN12Q05209 780 aaKnown RBP5.07□□□□□ -1.6
CD44-229ENST00000528672 MBTPS1Q14703 1052 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 TXNRD3Q86VQ6 643 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 GALNT11Q8NCW6 608 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 GRIN3AQ8TCU5 1115 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 BSNDQ8WZ55 320 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 DRC1Q96MC2 740 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 ZC3H12CQ9C0D7 883 aaKnown RBP5.07□□□□□ -1.6
CD44-229ENST00000528672 ZNF576Q9H609 170 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 OSGEPQ9NPF4 335 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 SOX13Q9UN79 622 aa5.07□□□□□ -1.6
CD44-229ENST00000528672 SOX1O00570 391 aaPredicted RBP5.06□□□□□ -1.6
CD44-229ENST00000528672 DYRK3O43781 588 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 ZC3H6P61129 1189 aaKnown RBP5.06□□□□□ -1.6
CD44-229ENST00000528672 PTPN11Q06124 597 aaPredicted RBP5.06□□□□□ -1.6
CD44-229ENST00000528672 PRPF40BQ6NWY9 871 aaKnown RBP5.06□□□□□ -1.6
CD44-229ENST00000528672 DTHD1Q6ZMT9 781 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 Q6ZS46 218 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 NBPF11Q86T75 865 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 FBF1Q8TES7 1133 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 SLC7A3Q8WY07 619 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 ACBD3Q9H3P7 528 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 SEC31BQ9NQW1 1179 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 TTF2Q9UNY4 1162 aaKnown RBP5.06□□□□□ -1.6
CD44-229ENST00000528672 SPG7Q9UQ90 795 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 PCDHB5Q9Y5E4 795 aa5.06□□□□□ -1.6
CD44-229ENST00000528672 ENC1O14682 589 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 FSCN2O14926 492 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 DLGAP3O95886 979 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 FGD1P98174 961 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 GRIK4Q16099 956 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 PRSS36Q5K4E3 855 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 NT5DC4Q86YG4 428 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 KRTAP19-1Q8IUB9 90 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 SREK1Q8WXA9 508 aaKnown RBP5.05□□□□□ -1.6
CD44-229ENST00000528672 ZFYVE1Q9HBF4 777 aa5.05□□□□□ -1.6
CD44-229ENST00000528672 USP31Q70CQ4 1352 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 MINDY4BA8MYZ0 360 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 ADAM11O75078 769 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 WISP1O95388 367 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 H2AFB1P0C5Y9 115 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 H2AFB2P0C5Z0 115 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 CD68P34810 354 aaPredicted RBP5.04□□□□□ -1.6
CD44-229ENST00000528672 ITGAEP38570 1179 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 FAM160A1Q05DH4 1040 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 PCDH1Q08174 1060 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 UVSSAQ2YD98 709 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 WDR89Q96FK6 387 aaPredicted RBP5.04□□□□□ -1.6
CD44-229ENST00000528672 KLHDC7BQ96G42 594 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 SSBP4Q9BWG4 385 aaPredicted RBP5.04□□□□□ -1.6
CD44-229ENST00000528672 KBTBD4Q9NVX7 518 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 FAM8A1Q9UBU6 413 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 USP21Q9UK80 565 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 TRAK1Q9UPV9 953 aa5.04□□□□□ -1.6
CD44-229ENST00000528672 SCAMP3O14828 347 aaKnown RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 HMGB1P09429 215 aaKnown RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 ESRRAP11474 423 aaPredicted RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 XRCC5P13010 732 aaKnown RBP5.03□□□□□ -1.6
CD44-229ENST00000528672 ITPKAP23677 461 aa5.03□□□□□ -1.6
CD44-229ENST00000528672 ERCC5P28715 1186 aaPredicted RBP5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms