RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 RNF112Q9ULX5 631 aa4.46□□□□□ -1.7
CD44-216ENST00000525293 PNMA6FA0A0J9YX94 578 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 TREHO43280 583 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 EIF4EBP3O60516 100 aaPredicted RBP4.45□□□□□ -1.7
CD44-216ENST00000525293 B3GALT4O96024 378 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 IGLV1-40P01703 118 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 CYP11A1P05108 521 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 CTSBP07858 339 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 DRD2P14416 443 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 ZNF157P51786 506 aaPredicted RBP4.45□□□□□ -1.7
CD44-216ENST00000525293 PTPN12Q05209 780 aaKnown RBP4.45□□□□□ -1.7
CD44-216ENST00000525293 KCNA1Q09470 495 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 GRM2Q14416 872 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 SGO2Q562F6 1265 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 ARTNQ5T4W7 220 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.45□□□□□ -1.7
CD44-216ENST00000525293 BEND4Q6ZU67 534 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 SLC51AQ86UW1 340 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 CLEC10AQ8IUN9 316 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 GLIS3Q8NEA6 775 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 DDX54Q8TDD1 881 aaKnown RBP4.45□□□□□ -1.7
CD44-216ENST00000525293 FAM83CQ9BQN1 747 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 TRAIPQ9BWF2 469 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 NRSN2Q9GZP1 204 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 SUGCTQ9HAC7 445 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 TRAK1Q9UPV9 953 aa4.45□□□□□ -1.7
CD44-216ENST00000525293 GSC2O15499 205 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 HYAL3O43820 417 aaPredicted RBP4.44□□□□□ -1.7
CD44-216ENST00000525293 TIAF1O95411 115 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 ECEL1O95672 775 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 MAP4P27816 1152 aaKnown RBP4.44□□□□□ -1.7
CD44-216ENST00000525293 RXRBP28702 533 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 FCGRTP55899 365 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 SOX4Q06945 474 aaPredicted RBP4.44□□□□□ -1.7
CD44-216ENST00000525293 NFIAQ12857 509 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 LRP8Q14114 963 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 RNF43Q68DV7 783 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 PRPF40BQ6NWY9 871 aaKnown RBP4.44□□□□□ -1.7
CD44-216ENST00000525293 CORO1BQ9BR76 489 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 TRIM56Q9BRZ2 755 aaKnown RBP4.44□□□□□ -1.7
CD44-216ENST00000525293 KRTAP9-9Q9BYP9 154 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 KRTAP9-4Q9BYQ2 154 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 BCO2Q9BYV7 579 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 RAD18Q9NS91 495 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 PPP4R2Q9NY27 417 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 HIF3AQ9Y2N7 669 aa4.44□□□□□ -1.7
CD44-216ENST00000525293 SSTR4P31391 388 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 MAPK8P45983 427 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 USP11P51784 963 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 FAAP100Q0VG06 881 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 ENOX2Q16206 610 aaKnown RBP4.43□□□□□ -1.7
CD44-216ENST00000525293 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.43□□□□□ -1.7
CD44-216ENST00000525293 RPS26P11Q5JNZ5 115 aaPredicted RBP4.43□□□□□ -1.7
CD44-216ENST00000525293 NXPE4Q6UWF7 544 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 DTHD1Q6ZMT9 781 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 ZSCAN29Q8IWY8 852 aaPredicted RBP4.43□□□□□ -1.7
CD44-216ENST00000525293 FBLIM1Q8WUP2 373 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 ZFYVE1Q9HBF4 777 aa4.43□□□□□ -1.7
CD44-216ENST00000525293 TGFB1P01137 390 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 PDE3AQ14432 1141 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 NFKBIBQ15653 356 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 AKAP4Q5JQC9 854 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 HP1BP3Q5SSJ5 553 aaPredicted RBP4.42□□□□□ -1.7
CD44-216ENST00000525293 CDPF1Q6NVV7 123 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 DYMQ7RTS9 669 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 NBPF11Q86T75 865 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 ZDHHC13Q8IUH4 622 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 C2CD4AQ8NCU7 369 aaPredicted RBP4.42□□□□□ -1.7
CD44-216ENST00000525293 MFSD14AQ96MC6 490 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 ASB16Q96NS5 453 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 SETDB2Q96T68 719 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 DBNDD2Q9BQY9 259 aa4.42□□□□□ -1.7
CD44-216ENST00000525293 ZC3H12CQ9C0D7 883 aaKnown RBP4.42□□□□□ -1.7
CD44-216ENST00000525293 FAM95CA0A1B0GW59 222 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 WDR64B1ANS9 1081 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 MED26O95402 600 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 ADH5P11766 374 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 AP3B2Q13367 1082 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 AEBP1Q8IUX7 1158 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 SHKBP1Q8TBC3 707 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 PCMTD2Q9NV79 361 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 GPN3Q9UHW5 284 aaPredicted RBP4.41□□□□□ -1.7
CD44-216ENST00000525293 WWC3Q9ULE0 1092 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 AP4E1Q9UPM8 1137 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 AKAP2Q9Y2D5 859 aa4.41□□□□□ -1.7
CD44-216ENST00000525293 PRR19A6NJB7 356 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 PATL2C9JE40 543 aaKnown RBP4.4□□□□□ -1.71
CD44-216ENST00000525293 AOC2O75106 756 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 COBLO75128 1261 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 XRCC5P13010 732 aaKnown RBP4.4□□□□□ -1.71
CD44-216ENST00000525293 LIG1P18858 919 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 PPP2R3AQ06190 1150 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 FMR1Q06787 632 aaKnown RBP eCLIP4.4□□□□□ -1.71
CD44-216ENST00000525293 PAOXQ6QHF9 649 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 FBXL6Q8N531 539 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 WDR89Q96FK6 387 aaPredicted RBP4.4□□□□□ -1.71
CD44-216ENST00000525293 WDR18Q9BV38 432 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 YIPF2Q9BWQ6 316 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 TMEM39AQ9NV64 488 aa4.4□□□□□ -1.71
CD44-216ENST00000525293 ACTL7BQ9Y614 415 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms