RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 MYRFLQ96LU7 910 aa9.42□□□□□ -0.9
SKP1-213ENST00000524288 BCL11AQ9H165 835 aa9.42□□□□□ -0.9
SKP1-213ENST00000524288 MRS2Q9HD23 443 aa9.42□□□□□ -0.9
SKP1-213ENST00000524288 MEGF11A6BM72 1044 aa9.41□□□□□ -0.9
SKP1-213ENST00000524288 EIF1AYO14602 144 aaKnown RBP9.41□□□□□ -0.9
SKP1-213ENST00000524288 PSMD2Q13200 908 aa9.41□□□□□ -0.9
SKP1-213ENST00000524288 MRPL58Q14197 206 aaKnown RBP9.41□□□□□ -0.9
SKP1-213ENST00000524288 VTI1BQ9UEU0 232 aa9.41□□□□□ -0.9
SKP1-213ENST00000524288 HYAL3O43820 417 aaPredicted RBP9.4□□□□□ -0.9
SKP1-213ENST00000524288 IGLV1-40P01703 118 aa9.4□□□□□ -0.9
SKP1-213ENST00000524288 NLRP12P59046 1061 aa9.4□□□□□ -0.9
SKP1-213ENST00000524288 USPL1Q5W0Q7 1092 aa9.4□□□□□ -0.9
SKP1-213ENST00000524288 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.4□□□□□ -0.9
SKP1-213ENST00000524288 GALNT12Q8IXK2 581 aa9.4□□□□□ -0.9
SKP1-213ENST00000524288 RUSC1Q9BVN2 902 aa9.4□□□□□ -0.9
SKP1-213ENST00000524288 HIF3AQ9Y2N7 669 aa9.4□□□□□ -0.9
SKP1-213ENST00000524288 SOX1O00570 391 aaPredicted RBP9.39□□□□□ -0.91
SKP1-213ENST00000524288 SART1O43290 800 aaKnown RBP9.39□□□□□ -0.91
SKP1-213ENST00000524288 C9orf131Q5VYM1 1079 aa9.39□□□□□ -0.91
SKP1-213ENST00000524288 FDX2Q6P4F2 183 aa9.39□□□□□ -0.91
SKP1-213ENST00000524288 ASAP3Q8TDY4 903 aa9.39□□□□□ -0.91
SKP1-213ENST00000524288 ESRRAP11474 423 aaPredicted RBP9.38□□□□□ -0.91
SKP1-213ENST00000524288 DAB2P98082 770 aa9.38□□□□□ -0.91
SKP1-213ENST00000524288 ALG1LQ6GMV1 187 aa9.38□□□□□ -0.91
SKP1-213ENST00000524288 PI16Q6UXB8 463 aa9.38□□□□□ -0.91
SKP1-213ENST00000524288 LATS2Q9NRM7 1088 aa9.38□□□□□ -0.91
SKP1-213ENST00000524288 SORBS3O60504 671 aa9.37□□□□□ -0.91
SKP1-213ENST00000524288 TMC4Q7Z404 712 aa9.37□□□□□ -0.91
SKP1-213ENST00000524288 CLEC10AQ8IUN9 316 aa9.37□□□□□ -0.91
SKP1-213ENST00000524288 FAM20CQ8IXL6 584 aa9.37□□□□□ -0.91
SKP1-213ENST00000524288 TMEM87AQ8NBN3 555 aa9.37□□□□□ -0.91
SKP1-213ENST00000524288 CPNE3O75131 537 aaKnown RBP9.36□□□□□ -0.91
SKP1-213ENST00000524288 POLR3DP05423 398 aaPredicted RBP9.36□□□□□ -0.91
SKP1-213ENST00000524288 PREPP48147 710 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 FGD1P98174 961 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 NFIAQ12857 509 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 LDLRAD1Q5T700 205 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 CCNJLQ8IV13 435 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 TMPRSS13Q9BYE2 586 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 C7orf69Q9H7B7 122 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 SUGCTQ9HAC7 445 aa9.36□□□□□ -0.91
SKP1-213ENST00000524288 A0A1W2PP55 124 aa9.35□□□□□ -0.91
SKP1-213ENST00000524288 HGSNATQ68CP4 663 aa9.35□□□□□ -0.91
SKP1-213ENST00000524288 RNF43Q68DV7 783 aa9.35□□□□□ -0.91
SKP1-213ENST00000524288 FAM83CQ9BQN1 747 aa9.35□□□□□ -0.91
SKP1-213ENST00000524288 DBNDD2Q9BQY9 259 aa9.35□□□□□ -0.91
SKP1-213ENST00000524288 CYP4F12Q9HCS2 524 aa9.35□□□□□ -0.91
SKP1-213ENST00000524288 USP35Q9P2H5 1018 aa9.35□□□□□ -0.91
SKP1-213ENST00000524288 LOC100289279A0A1B0GTE1 492 aa9.34□□□□□ -0.91
SKP1-213ENST00000524288 BMP3P12645 472 aa9.34□□□□□ -0.91
SKP1-213ENST00000524288 GNA15P30679 374 aa9.34□□□□□ -0.91
SKP1-213ENST00000524288 HDLBPQ00341 1268 aaKnown RBP9.34□□□□□ -0.91
SKP1-213ENST00000524288 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.34□□□□□ -0.91
SKP1-213ENST00000524288 NUTM2GQ5VZR2 741 aa9.34□□□□□ -0.91
SKP1-213ENST00000524288 TRIM42Q8IWZ5 723 aa9.34□□□□□ -0.91
SKP1-213ENST00000524288 SMG8Q8ND04 991 aaKnown RBP9.34□□□□□ -0.91
SKP1-213ENST00000524288 EPS8L3Q8TE67 593 aaKnown RBP9.34□□□□□ -0.91
SKP1-213ENST00000524288 USP26Q9BXU7 913 aa9.34□□□□□ -0.91
SKP1-213ENST00000524288 CLEC4MQ9H2X3 399 aaPredicted RBP9.34□□□□□ -0.91
SKP1-213ENST00000524288 LIN7BQ9HAP6 207 aa9.34□□□□□ -0.91
SKP1-213ENST00000524288 A0A096LPE4 126 aa9.33□□□□□ -0.92
SKP1-213ENST00000524288 A0A1W2PPZ6 126 aa9.33□□□□□ -0.92
SKP1-213ENST00000524288 GAS2O43903 313 aaKnown RBP9.33□□□□□ -0.92
SKP1-213ENST00000524288 CD97P48960 835 aa9.33□□□□□ -0.92
SKP1-213ENST00000524288 KIAA0319Q5VV43 1072 aa9.33□□□□□ -0.92
SKP1-213ENST00000524288 TCF12Q99081 682 aa9.33□□□□□ -0.92
SKP1-213ENST00000524288 DNAJC25Q9H1X3 360 aa9.33□□□□□ -0.92
SKP1-213ENST00000524288 PCMTD2Q9NV79 361 aa9.33□□□□□ -0.92
SKP1-213ENST00000524288 SCAMP3O14828 347 aaKnown RBP9.32□□□□□ -0.92
SKP1-213ENST00000524288 PCDH1Q08174 1060 aa9.32□□□□□ -0.92
SKP1-213ENST00000524288 EXOSC6Q5RKV6 272 aaKnown RBP9.32□□□□□ -0.92
SKP1-213ENST00000524288 HP1BP3Q5SSJ5 553 aaPredicted RBP9.32□□□□□ -0.92
SKP1-213ENST00000524288 BEND4Q6ZU67 534 aa9.32□□□□□ -0.92
SKP1-213ENST00000524288 FBF1Q8TES7 1133 aa9.32□□□□□ -0.92
SKP1-213ENST00000524288 CCDC74AQ96AQ1 378 aa9.32□□□□□ -0.92
SKP1-213ENST00000524288 ZFYVE1Q9HBF4 777 aa9.32□□□□□ -0.92
SKP1-213ENST00000524288 NPHS2Q9NP85 383 aa9.32□□□□□ -0.92
SKP1-213ENST00000524288 HMX2A2RU54 273 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 METTL12A8MUP2 240 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 COBLO75128 1261 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 TIAF1O95411 115 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 ERCC5P28715 1186 aaPredicted RBP9.31□□□□□ -0.92
SKP1-213ENST00000524288 GSTM4Q03013 218 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 ZDHHC13Q8IUH4 622 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 DDX54Q8TDD1 881 aaKnown RBP9.31□□□□□ -0.92
SKP1-213ENST00000524288 NRSN2Q9GZP1 204 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 KCNF1Q9H3M0 494 aa9.31□□□□□ -0.92
SKP1-213ENST00000524288 CYP11A1P05108 521 aa9.3□□□□□ -0.92
SKP1-213ENST00000524288 GRIK1P39086 918 aa9.3□□□□□ -0.92
SKP1-213ENST00000524288 GRIA4P48058 902 aa9.3□□□□□ -0.92
SKP1-213ENST00000524288 INTS5Q6P9B9 1019 aaKnown RBP9.3□□□□□ -0.92
SKP1-213ENST00000524288 SPG7Q9UQ90 795 aa9.3□□□□□ -0.92
SKP1-213ENST00000524288 KIAA1324LA8MWY0 1029 aaPredicted RBP9.29□□□□□ -0.92
SKP1-213ENST00000524288 CTSHP09668 335 aa9.29□□□□□ -0.92
SKP1-213ENST00000524288 PTPN12Q05209 780 aaKnown RBP9.29□□□□□ -0.92
SKP1-213ENST00000524288 C12orf50Q8NA57 414 aaPredicted RBP9.29□□□□□ -0.92
SKP1-213ENST00000524288 NLRP2Q9NX02 1062 aa9.29□□□□□ -0.92
SKP1-213ENST00000524288 AK5Q9Y6K8 562 aa9.29□□□□□ -0.92
SKP1-213ENST00000524288 TGFB1P01137 390 aa9.28□□□□□ -0.92
SKP1-213ENST00000524288 EIF4BP23588 611 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms