RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 NOP58Q9Y2X3 529 aaKnown RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 SSR1P43307 286 aaKnown RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 FOXD4Q12950 439 aaPredicted RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 SF3B2Q13435 895 aaKnown RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 UTP14CQ5TAP6 766 aaKnown RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 MPRIPQ6WCQ1 1025 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 SREK1Q8WXA9 508 aaKnown RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 LRRC4BQ9NT99 713 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 KIAA1522Q9P206 1035 aaPredicted RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 CCDC180Q9P1Z9 1646 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 HMGB1P1B2RPK0 211 aaPredicted RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 DRD2P14416 443 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 ITGB7P26010 798 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 KCNMA1Q12791 1236 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 NBPF6Q5VWK0 638 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 KRBA2Q6ZNG9 492 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 NBPF5PQ86XG9 351 aaPredicted RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 UBASH3BQ8TF42 649 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 NBPF4Q96M43 638 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 PBX4Q9BYU1 374 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 YY1AP1Q9H869 796 aa3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 FNDC3AQ9Y2H6 1198 aaKnown RBP3.91□□□□□ -1.78
SNRNP48-202ENST00000496946 SOX18P35713 384 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 GIMAP6Q6P9H5 292 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 VN1R5Q7Z5H4 357 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 WFDC8Q8IUA0 241 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 PNMA6FA0A0J9YX94 578 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 TM4SF5O14894 197 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 NDUFB5O43674 189 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 IREB2P48200 963 aaKnown RBP3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 KCNA1Q09470 495 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 NXPE4Q6UWF7 544 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 MKL1Q969V6 931 aa3.9□□□□□ -1.79
SNRNP48-202ENST00000496946 ZNF500O60304 480 aaPredicted RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 CTSBP07858 339 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 TNNT2P45379 298 aaPredicted RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 EHHADHQ08426 723 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 DNTTIP2Q5QJE6 756 aaKnown RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 SNX29Q8TEQ0 813 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 FAM129BQ96TA1 746 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 BSDC1Q9NW68 430 aaPredicted RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 GEMIN8Q9NWZ8 242 aaKnown RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 RAI14Q9P0K7 980 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 NUB1Q9Y5A7 615 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 RPS6KL1Q9Y6S9 549 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 GOLGA6CA6NDK9 693 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 GOLGA6BA6NDN3 693 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 KIF4AO95239 1232 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 GOLGA6DP0CG33 693 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 MAP2K1Q02750 393 aaPredicted RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 HYAL2Q12891 473 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 MBTPS1Q14703 1052 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 LONRF3Q496Y0 759 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 SND1Q7KZF4 910 aaKnown RBP eCLIP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 MSL3Q8N5Y2 521 aaKnown RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 FBXO41Q8TF61 875 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 TPSG1Q9NRR2 321 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 GOLGA6AQ9NYA3 693 aa3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 FEZ2Q9UHY8 353 aaPredicted RBP3.89□□□□□ -1.79
SNRNP48-202ENST00000496946 PDE2AO00408 941 aaPredicted RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 MAP4K4O95819 1239 aaPredicted RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 P4HBP07237 508 aaKnown RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 SPATA31C1P0DKV0 1188 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 SLC20A2Q08357 652 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 TRIM28Q13263 835 aaKnown RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 MTA1Q13330 715 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 WDR78Q5VTH9 848 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 CCDC74AQ96AQ1 378 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 EVI5LQ96CN4 794 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 MEGF10Q96KG7 1140 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 UBA5Q9GZZ9 404 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 A0A1W2PP55 124 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 RNF225M0QZC1 329 aaPredicted RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 DHX16O60231 1041 aaKnown RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 TCF3P15923 654 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 SCP2P22307 547 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 ZKSCAN8Q15776 578 aaPredicted RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 ZNF513Q8N8E2 541 aaPredicted RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 CXorf38Q8TB03 319 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 MORC4Q8TE76 937 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 OSBPL7Q9BZF2 842 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 ZFYVE28Q9HCC9 887 aa3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 GNEQ9Y223 722 aaKnown RBP3.88□□□□□ -1.79
SNRNP48-202ENST00000496946 WASHC2AQ641Q2 1341 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 RBM47A0AV96 593 aaKnown RBP3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 SOX1O00570 391 aaPredicted RBP3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 FSCN2O14926 492 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 ZRANB2O95218 330 aaKnown RBP eCLIP3.87□□□□□ -1.793e-7■■■■□ 25.7
SNRNP48-202ENST00000496946 GLB1P16278 677 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 PCSK2P16519 638 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 FAAP100Q0VG06 881 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 GRM2Q14416 872 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 ZNF423Q2M1K9 1284 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 CCDC181Q5TID7 509 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 ZNF280DQ6N043 979 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 KANK3Q6NY19 840 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 ANKRD23Q86SG2 305 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 NGEFQ8N5V2 710 aa3.87□□□□□ -1.79
SNRNP48-202ENST00000496946 NXPE3Q969Y0 559 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms