RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CFAP45Q9UL16 551 aa19.3■□□□□ 0.68
CCDC88B-210ENST00000494566 ZNF532Q9HCE3 1301 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 AKAP11Q9UKA4 1901 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 GOLGA6L19H0YKK7 550 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 PDE8BO95263 885 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 RALYLQ86SE5 291 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 TBC1D10CQ8IV04 446 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 ZNF274Q96GC6 653 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 DDX19AQ9NUU7 478 aaKnown RBP19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 ZFYP08048 801 aaPredicted RBP19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 ME1P48163 572 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 AIFM3Q96NN9 605 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 CTNNA3Q9UI47 895 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 HPS5Q9UPZ3 1129 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 CDHR2Q9BYE9 1310 aa19.29■□□□□ 0.68
CCDC88B-210ENST00000494566 ADD2P35612 726 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 SUSD4Q5VX71 490 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 NUP98P52948 1817 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 NAA16Q6N069 864 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 BECN2A8MW95 431 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 PDE8AO60658 829 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 CYB5R4Q7L1T6 521 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 FBXO3Q9UK99 471 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 SLIT2O94813 1529 aa19.28■□□□□ 0.68
CCDC88B-210ENST00000494566 NHSL1Q5SYE7 1610 aa19.27■□□□□ 0.68
CCDC88B-210ENST00000494566 LRRFIP1Q32MZ4 808 aaKnown RBP19.27■□□□□ 0.68
CCDC88B-210ENST00000494566 NCOA7Q8NI08 942 aa19.27■□□□□ 0.68
CCDC88B-210ENST00000494566 IQSEC3Q9UPP2 1182 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-210ENST00000494566 A0A1B0GVL5 298 aa19.27■□□□□ 0.67
CCDC88B-210ENST00000494566 SMIM5Q71RC9 77 aa19.27■□□□□ 0.67
CCDC88B-210ENST00000494566 MYL10Q9BUA6 226 aa19.27■□□□□ 0.67
CCDC88B-210ENST00000494566 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.27■□□□□ 0.676e-7■■■■□ 21.9
CCDC88B-210ENST00000494566 ORC3Q9UBD5 711 aaPredicted RBP19.27■□□□□ 0.67
CCDC88B-210ENST00000494566 SPEF2Q9C093 1822 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 DISP2A7MBM2 1401 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 B4E1Z4 1266 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 ZSCAN20P17040 1043 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 LRP6O75581 1613 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 MYH7P12883 1935 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 PDE6AP16499 860 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 KCNQ4P56696 695 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 CLIC4Q9Y696 253 aa19.26■□□□□ 0.67
CCDC88B-210ENST00000494566 UBE2Q2LH0YL09 131 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 CPLX1O14810 134 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 MTERF4Q7Z6M4 381 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 RCOR1Q9UKL0 485 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 MYH3P11055 1940 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 ATP6V1AP38606 617 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 NCBP1Q09161 790 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 HSP90AA4PQ58FG1 418 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 AOPEPQ8N6M6 819 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 C8orf76Q96K31 380 aa19.25■□□□□ 0.67
CCDC88B-210ENST00000494566 WTIPA6NIX2 430 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 FSIP1Q8NA03 581 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 KIF28PB7ZC32 967 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 CTDSPL2Q05D32 466 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 MAGEB6Q8N7X4 407 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 PHKBQ93100 1093 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 MYH15Q9Y2K3 1946 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 NUTM2BA6NNL0 878 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 NUTM2EB1AL46 878 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 IL6STP40189 918 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 SNW1Q13573 536 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 RASGRF1Q13972 1273 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 MICU3Q86XE3 530 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 NUTM2AQ8IVF1 878 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 ZNF34Q8IZ26 560 aa19.24■□□□□ 0.67
CCDC88B-210ENST00000494566 CRKLP46109 303 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 INTS5Q6P9B9 1019 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 RBM43Q6ZSC3 357 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 PCDHA7Q9UN72 937 aa19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 NEDD4P46934 1319 aa19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 BCAMP50895 628 aa19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 AIDAQ96BJ3 306 aa19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 ARMT1Q9H993 441 aa19.23■□□□□ 0.67
CCDC88B-210ENST00000494566 PRKAB2O43741 272 aa19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 TRDNQ13061 729 aa19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 PUM3Q15397 648 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 SMAP1Q8IYB5 467 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 MPHOSPH8Q99549 860 aa19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 SDF4Q9BRK5 362 aa19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 ITPK1Q13572 414 aa19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 CCDC73Q6ZRK6 1079 aa19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 CCDC112Q8NEF3 446 aa19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 ZNF396Q96N95 335 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-210ENST00000494566 MBD4O95243 580 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 SKILP12757 684 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 PLA2G4DQ86XP0 818 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 SPATA5Q8NB90 893 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 TMX1Q9H3N1 280 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 TACC3Q9Y6A5 838 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 DDB1Q16531 1140 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 MIGA1Q8NAN2 632 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 LPIN2Q92539 896 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 EPB41L4AQ9HCS5 686 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 ANKRD36CQ5JPF3 1778 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 TCRBV5S4A2TA0A5A2 114 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 KINO60870 393 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 CDC27P30260 824 aa19.21■□□□□ 0.67
CCDC88B-210ENST00000494566 GTF2F1P35269 517 aaKnown RBP eCLIP19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms