RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 PDE1CQ14123 709 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-228ENST00000490135 TRIM74Q86UV6 250 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 TRIM73Q86UV7 250 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 PARP9Q8IXQ6 854 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 PPFIBP2Q8ND30 876 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 ERMNQ8TAM6 284 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 ZNF428Q96B54 188 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 KIF1BPQ96EK5 621 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 SCAND2PQ9GZW5 306 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-228ENST00000490135 LCMT1Q9UIC8 334 aa8.14□□□□□ -1.11
SYNE1-228ENST00000490135 NOB1Q9ULX3 412 aaKnown RBP8.14□□□□□ -1.11
SYNE1-228ENST00000490135 PLEKHG2Q9H7P9 1386 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 GOLGA8AA7E2F4 631 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 GOLGA8BA8MQT2 603 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 EEF2P13639 858 aaKnown RBP8.13□□□□□ -1.11
SYNE1-228ENST00000490135 MAP3K12Q12852 859 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 KIAA0825Q8IV33 1275 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 GOLGA8KD6RF30 607 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 E7EVH7 732 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 MGEA5O60502 916 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 GJC1P36383 396 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 SETDB1Q15047 1291 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 LONRF2Q1L5Z9 754 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 C17orf50Q8WW18 174 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 SEPT8Q92599 483 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 SEC62Q99442 399 aaKnown RBP8.13□□□□□ -1.11
SYNE1-228ENST00000490135 BATF3Q9NR55 127 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 KLC4Q9NSK0 619 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 ZBTB24O43167 697 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-228ENST00000490135 RNF40O75150 1001 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 ERCC5P28715 1186 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-228ENST00000490135 CUL3Q13618 768 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 VPS52Q8N1B4 723 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 DACT3Q96B18 629 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-228ENST00000490135 GOLGA6BA6NDN3 693 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 WDR46O15213 610 aaKnown RBP8.13□□□□□ -1.11
SYNE1-228ENST00000490135 NUCB1Q02818 461 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 PPFIA1Q13136 1202 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 GRM1Q13255 1194 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 KARSQ15046 597 aaKnown RBP8.13□□□□□ -1.11
SYNE1-228ENST00000490135 OLFML1Q6UWY5 402 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 LRRC8AQ8IWT6 810 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 SELENOSQ9BQE4 189 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 CBX8Q9HC52 389 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 PSD3Q9NYI0 1048 aa8.13□□□□□ -1.11
SYNE1-228ENST00000490135 ATP6V1E1P36543 226 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 DIXDC1Q155Q3 683 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 RBM26Q5T8P6 1007 aaKnown RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 IFT74Q96LB3 600 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 NUF2Q9BZD4 464 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 CD248Q9HCU0 757 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 ANKFY1Q9P2R3 1169 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 HLA-DOAP06340 250 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 PLCB3Q01970 1234 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 DPH6Q7L8W6 267 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 CACNA2D3Q8IZS8 1091 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 RNF10Q8N5U6 811 aaKnown RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 AOPEPQ8N6M6 819 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 CCDC85AQ96PX6 553 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 TMEM165Q9HC07 324 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 ZCCHC17Q9NP64 241 aaKnown RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 TTF1Q15361 905 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 PPP1R7Q15435 360 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 B4GALNT2Q8NHY0 566 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 ACTR5Q9H9F9 607 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 EXOC1Q9NV70 894 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 AKR1B10O60218 316 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 SLC5A1P13866 664 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 PRKAR2BP31323 418 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 SCRN1Q12765 414 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 TCP11Q8WWU5 503 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 STMN2Q93045 179 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 CABP2Q9NPB3 220 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 SAMD15Q9P1V8 674 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 B4DLN1 442 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 GJA8P48165 433 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 MRPL12P52815 198 aaKnown RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 NAA16Q6N069 864 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 ARHGAP22Q7Z5H3 698 aa8.12□□□□□ -1.11
SYNE1-228ENST00000490135 C16orf71Q8IYS4 520 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-228ENST00000490135 RAPGEF2Q9Y4G8 1499 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 PPFIA3O75145 1194 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 TUBB2AQ13885 445 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 MUM1Q2TAK8 710 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 GKAP1Q5VSY0 366 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 AFAP1L2Q8N4X5 818 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 MSL3Q8N5Y2 521 aaKnown RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 PPP1R13BQ96KQ4 1090 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 TUBB2BQ9BVA1 445 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 RABGAP1Q9Y3P9 1069 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 NCOA2Q15596 1464 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 RAD54L2Q9Y4B4 1467 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 MAFGO15525 162 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 PPFIA2O75334 1257 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 EXOSC9Q06265 439 aaKnown RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 TAF11Q15544 211 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 MORC4Q8TE76 937 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 UTP6Q9NYH9 597 aaKnown RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 RUSC2Q8N2Y8 1516 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms