RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 SOX1O00570 391 aaPredicted RBP11.74□□□□□ -0.53
MCF2-207ENST00000483690 SLURP2P0DP57 97 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 BCRP11274 1271 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 TFE3P19532 575 aaPredicted RBP11.74□□□□□ -0.53
MCF2-207ENST00000483690 LRRC14Q15048 493 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 FBXL19Q6PCT2 694 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 WFDC8Q8IUA0 241 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 SLC7A3Q8WY07 619 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 SPATA32Q96LK8 384 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 LRRC4BQ9NT99 713 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 CYP8B1Q9UNU6 501 aa11.74□□□□□ -0.53
MCF2-207ENST00000483690 EIF4EBP3O60516 100 aaPredicted RBP11.73□□□□□ -0.53
MCF2-207ENST00000483690 AMPD1P23109 780 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 BAG6P46379 1132 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 ARL4DP49703 201 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 GOLM1Q8NBJ4 401 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 RASGRP4Q8TDF6 673 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 BTBD6Q96KE9 485 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 EMILIN2Q9BXX0 1053 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 SOX17Q9H6I2 414 aaPredicted RBP11.73□□□□□ -0.53
MCF2-207ENST00000483690 CBX8Q9HC52 389 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 KCNQ5Q9NR82 932 aa11.73□□□□□ -0.53
MCF2-207ENST00000483690 LINC01387J3KSC0 135 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 ATP2B1P20020 1258 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 BMP6P22004 513 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 ARNTP27540 789 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 PIP4K2BP78356 416 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 AP3B2Q13367 1082 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 TXNDC11Q6PKC3 985 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 C8orf86Q6ZUL3 223 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 TRIM42Q8IWZ5 723 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 MIR1-1HGQ9H1L0 117 aa11.72□□□□□ -0.53
MCF2-207ENST00000483690 GSTM4Q03013 218 aa11.71□□□□□ -0.53
MCF2-207ENST00000483690 DIEXFQ68CQ4 756 aaKnown RBP11.71□□□□□ -0.53
MCF2-207ENST00000483690 MSL1Q68DK7 614 aa11.71□□□□□ -0.53
MCF2-207ENST00000483690 LLGL2Q6P1M3 1020 aa11.71□□□□□ -0.53
MCF2-207ENST00000483690 WNT8BQ93098 351 aa11.71□□□□□ -0.53
MCF2-207ENST00000483690 EAF1Q96JC9 268 aaPredicted RBP11.71□□□□□ -0.53
MCF2-207ENST00000483690 NT5C1AQ9BXI3 368 aa11.71□□□□□ -0.53
MCF2-207ENST00000483690 SHISA8B8ZZ34 492 aa11.7□□□□□ -0.54
MCF2-207ENST00000483690 ATF4P18848 351 aaPredicted RBP11.7□□□□□ -0.54
MCF2-207ENST00000483690 GARTP22102 1010 aa11.7□□□□□ -0.54
MCF2-207ENST00000483690 C19orf57Q0VDD7 668 aa11.7□□□□□ -0.54
MCF2-207ENST00000483690 RASIP1Q5U651 963 aa11.7□□□□□ -0.54
MCF2-207ENST00000483690 STK35Q8TDR2 534 aa11.7□□□□□ -0.54
MCF2-207ENST00000483690 PRDM6Q9NQX0 595 aa11.7□□□□□ -0.54
MCF2-207ENST00000483690 GREM1O60565 184 aa11.69□□□□□ -0.54
MCF2-207ENST00000483690 GMPRP36959 345 aa11.69□□□□□ -0.54
MCF2-207ENST00000483690 CCDC84Q86UT8 332 aaPredicted RBP11.69□□□□□ -0.54
MCF2-207ENST00000483690 PCDHB5Q9Y5E4 795 aa11.69□□□□□ -0.54
MCF2-207ENST00000483690 FSCN2O14926 492 aa11.68□□□□□ -0.54
MCF2-207ENST00000483690 CELA2BP08218 269 aaPredicted RBP11.68□□□□□ -0.54
MCF2-207ENST00000483690 APOBRQ0VD83 1088 aa11.68□□□□□ -0.54
MCF2-207ENST00000483690 HGSNATQ68CP4 663 aa11.68□□□□□ -0.54
MCF2-207ENST00000483690 JARID2Q92833 1246 aaPredicted RBP11.68□□□□□ -0.54
MCF2-207ENST00000483690 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.68□□□□□ -0.54
MCF2-207ENST00000483690 OSGEPQ9NPF4 335 aa11.68□□□□□ -0.54
MCF2-207ENST00000483690 UBP1Q9NZI7 540 aa11.68□□□□□ -0.54
MCF2-207ENST00000483690 CYP11A1P05108 521 aa11.67□□□□□ -0.54
MCF2-207ENST00000483690 GTF2F1P35269 517 aaKnown RBP eCLIP11.67□□□□□ -0.54
MCF2-207ENST00000483690 LYPD4Q6UWN0 246 aa11.67□□□□□ -0.54
MCF2-207ENST00000483690 FAM196AQ6ZSG2 479 aa11.67□□□□□ -0.54
MCF2-207ENST00000483690 GRIN3AQ8TCU5 1115 aa11.67□□□□□ -0.54
MCF2-207ENST00000483690 SEC16BQ96JE7 1060 aa11.67□□□□□ -0.54
MCF2-207ENST00000483690 ROBO2Q9HCK4 1378 aa11.67□□□□□ -0.54
MCF2-207ENST00000483690 WFS1O76024 890 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 F13A1P00488 732 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 GSTP1P09211 210 aaKnown RBP11.66□□□□□ -0.54
MCF2-207ENST00000483690 FGRP09769 529 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 ZNF252P-AS1Q0IIN9 211 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 SEPT6Q14141 434 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 SCARA3Q6AZY7 606 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 BNC2Q6ZN30 1099 aaPredicted RBP11.66□□□□□ -0.54
MCF2-207ENST00000483690 PDZD3Q86UT5 571 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 MCF2L2Q86YR7 1114 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 ARMC5Q96C12 935 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 CARD10Q9BWT7 1032 aa11.66□□□□□ -0.54
MCF2-207ENST00000483690 MAP1SQ66K74 1059 aaPredicted RBP11.65□□□□□ -0.54
MCF2-207ENST00000483690 KLHL23Q8NBE8 558 aa11.65□□□□□ -0.54
MCF2-207ENST00000483690 GATAD2BQ8WXI9 593 aa11.65□□□□□ -0.54
MCF2-207ENST00000483690 CORO1BQ9BR76 489 aa11.65□□□□□ -0.54
MCF2-207ENST00000483690 EFR3BQ9Y2G0 817 aa11.65□□□□□ -0.54
MCF2-207ENST00000483690 COL9A2Q14055 689 aaPredicted RBP11.64□□□□□ -0.55
MCF2-207ENST00000483690 POU4F3Q15319 338 aa11.64□□□□□ -0.55
MCF2-207ENST00000483690 MAP4K3Q8IVH8 894 aa11.64□□□□□ -0.55
MCF2-207ENST00000483690 DMRTC2Q8IXT2 367 aaPredicted RBP11.64□□□□□ -0.55
MCF2-207ENST00000483690 DHX38Q92620 1227 aaKnown RBP11.64□□□□□ -0.55
MCF2-207ENST00000483690 KCNB2Q92953 911 aa11.64□□□□□ -0.55
MCF2-207ENST00000483690 NKD1Q969G9 470 aa11.64□□□□□ -0.55
MCF2-207ENST00000483690 TRIM37O94972 964 aa11.63□□□□□ -0.55
MCF2-207ENST00000483690 BPNT1O95861 308 aa11.63□□□□□ -0.55
MCF2-207ENST00000483690 NID1P14543 1247 aa11.63□□□□□ -0.55
MCF2-207ENST00000483690 CRKP46108 304 aa11.63□□□□□ -0.55
MCF2-207ENST00000483690 NASPP49321 788 aaPredicted RBP11.63□□□□□ -0.55
MCF2-207ENST00000483690 LCE2CQ5TA81 110 aa11.63□□□□□ -0.55
MCF2-207ENST00000483690 GINM1Q9NU53 330 aa11.63□□□□□ -0.55
MCF2-207ENST00000483690 FAM221AA4D161 298 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 TLR3O15455 904 aaKnown RBP11.62□□□□□ -0.55
MCF2-207ENST00000483690 MPP2Q14168 576 aa11.62□□□□□ -0.55
MCF2-207ENST00000483690 SETDB1Q15047 1291 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms