RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FGFR3P22607 806 aa9.23□□□□□ -0.93
CCDC88A-213ENST00000476903 NR1H3Q13133 447 aa9.23□□□□□ -0.93
CCDC88A-213ENST00000476903 TMEM259Q4ZIN3 620 aa9.23□□□□□ -0.93
CCDC88A-213ENST00000476903 MPRIPQ6WCQ1 1025 aa9.23□□□□□ -0.93
CCDC88A-213ENST00000476903 COL24A1Q17RW2 1714 aa9.22□□□□□ -0.93
CCDC88A-213ENST00000476903 KCNQ4P56696 695 aa9.22□□□□□ -0.93
CCDC88A-213ENST00000476903 IFNL2Q8IZJ0 200 aa9.22□□□□□ -0.93
CCDC88A-213ENST00000476903 DNAAF2Q9NVR5 837 aaKnown RBP9.22□□□□□ -0.93
CCDC88A-213ENST00000476903 TFCP2L1Q9NZI6 479 aa9.22□□□□□ -0.93
CCDC88A-213ENST00000476903 PALLDQ8WX93 1383 aa9.22□□□□□ -0.93
CCDC88A-213ENST00000476903 PHKG2P15735 406 aa9.21□□□□□ -0.94
CCDC88A-213ENST00000476903 AMPD1P23109 780 aa9.21□□□□□ -0.94
CCDC88A-213ENST00000476903 SMARCC1Q92922 1105 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-213ENST00000476903 CRISPLD1Q9H336 500 aa9.21□□□□□ -0.94
CCDC88A-213ENST00000476903 PNPLA7Q6ZV29 1317 aa9.21□□□□□ -0.94
CCDC88A-213ENST00000476903 VIRMAQ69YN4 1812 aaKnown RBP9.21□□□□□ -0.94
CCDC88A-213ENST00000476903 C4BP0C0L5 1744 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 HSP90AB1P08238 724 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 ARAFP10398 606 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 DOC2BQ14184 412 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 AMOTQ4VCS5 1084 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 PLEKHO1Q53GL0 409 aaPredicted RBP9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 CC2D1BQ5T0F9 858 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 RNF135Q8IUD6 432 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 KRTAP1-3Q8IUG1 177 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 PIGBQ92521 554 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 CCDC85AQ96PX6 553 aaPredicted RBP9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 TMOD3Q9NYL9 352 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 KLF15Q9UIH9 416 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 NPC1L1Q9UHC9 1359 aa9.2□□□□□ -0.94
CCDC88A-213ENST00000476903 UBR3Q6ZT12 1888 aa9.19□□□□□ -0.94
CCDC88A-213ENST00000476903 IL13P35225 146 aa9.19□□□□□ -0.94
CCDC88A-213ENST00000476903 MTHFSP49914 203 aa9.19□□□□□ -0.94
CCDC88A-213ENST00000476903 SEMA6BQ9H3T3 888 aa9.19□□□□□ -0.94
CCDC88A-213ENST00000476903 SCN11AQ9UI33 1791 aa9.19□□□□□ -0.94
CCDC88A-213ENST00000476903 PIK3R2O00459 728 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 POLD1P28340 1107 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 KDRP35968 1356 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 FOXD4L6Q3SYB3 417 aaPredicted RBP9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 ZNF831Q5JPB2 1677 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 EFHC2Q5JST6 749 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 C1orf141Q5JVX7 400 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 GNASQ5JWF2 1037 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 SULT6B1Q6IMI4 303 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 ZNF530Q6P9A1 599 aaPredicted RBP9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 FOXD4L3Q6VB84 417 aaPredicted RBP9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 AEBP1Q8IUX7 1158 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 PGBD3Q8N328 593 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 ARXQ96QS3 562 aa9.18□□□□□ -0.94
CCDC88A-213ENST00000476903 LOC102724428A0A0B4J2F2 783 aa9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 NEURL1BA8MQ27 555 aa9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 ERVV-2B6SEH9 535 aa9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 SIK1P57059 783 aa9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 TMEM214Q6NUQ4 689 aaKnown RBP9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 FLAD1Q8NFF5 587 aa9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 GOPCQ9HD26 462 aa9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 ASAP1Q9ULH1 1129 aa9.17□□□□□ -0.94
CCDC88A-213ENST00000476903 KDM6AO15550 1401 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 MAP3K5Q99683 1374 aa9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 CHD4Q14839 1912 aa9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 DIAPH1O60610 1272 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 STAU1O95793 577 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 CHSY3Q70JA7 882 aa9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 COL23A1Q86Y22 540 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 RHBDD1Q8TEB9 315 aa9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 TRIM11Q96F44 468 aa9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 SYT17Q9BSW7 474 aa9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 ATG3Q9NT62 314 aa9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 NOP53Q9NZM5 478 aaKnown RBP9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 COL5A3P25940 1745 aaPredicted RBP9.16□□□□□ -0.94
CCDC88A-213ENST00000476903 CABP4P57796 275 aa9.15□□□□□ -0.94
CCDC88A-213ENST00000476903 CNGB1Q14028 1251 aaPredicted RBP9.15□□□□□ -0.94
CCDC88A-213ENST00000476903 ZMYM1Q5SVZ6 1142 aa9.15□□□□□ -0.94
CCDC88A-213ENST00000476903 FCHSD1Q86WN1 690 aa9.15□□□□□ -0.94
CCDC88A-213ENST00000476903 KRTAP4-12Q9BQ66 201 aa9.15□□□□□ -0.94
CCDC88A-213ENST00000476903 ZCCHC2Q9C0B9 1178 aaKnown RBP9.15□□□□□ -0.94
CCDC88A-213ENST00000476903 CEP126Q9P2H0 1117 aa9.15□□□□□ -0.94
CCDC88A-213ENST00000476903 HMOX1P09601 288 aa9.14□□□□□ -0.95
CCDC88A-213ENST00000476903 TSGA10IPQ3SY00 556 aa9.14□□□□□ -0.95
CCDC88A-213ENST00000476903 AKAP4Q5JQC9 854 aa9.14□□□□□ -0.95
CCDC88A-213ENST00000476903 LINC00116Q8NCU8 138 aa9.14□□□□□ -0.95
CCDC88A-213ENST00000476903 ZNF592Q92610 1267 aa9.14□□□□□ -0.95
CCDC88A-213ENST00000476903 PCDHGC4Q9Y5F7 938 aa9.14□□□□□ -0.95
CCDC88A-213ENST00000476903 COL3A1P02461 1466 aaPredicted RBP9.14□□□□□ -0.95
CCDC88A-213ENST00000476903 ATP4AP20648 1035 aa9.13□□□□□ -0.95
CCDC88A-213ENST00000476903 SSFA2P28290 1259 aa9.13□□□□□ -0.95
CCDC88A-213ENST00000476903 ITPK1Q13572 414 aa9.13□□□□□ -0.95
CCDC88A-213ENST00000476903 RSPO4Q2I0M5 234 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-213ENST00000476903 ETNK1Q9HBU6 452 aa9.13□□□□□ -0.95
CCDC88A-213ENST00000476903 ADAMTS7Q9UKP4 1686 aa9.13□□□□□ -0.95
CCDC88A-213ENST00000476903 CICQ96RK0 1608 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-213ENST00000476903 MYH14Q7Z406 1995 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-213ENST00000476903 YY1P25490 414 aa9.12□□□□□ -0.95
CCDC88A-213ENST00000476903 NKAPLQ5M9Q1 402 aa9.12□□□□□ -0.95
CCDC88A-213ENST00000476903 MSL1Q68DK7 614 aa9.12□□□□□ -0.95
CCDC88A-213ENST00000476903 NFATC2IPQ8NCF5 419 aa9.12□□□□□ -0.95
CCDC88A-213ENST00000476903 CFAP53Q96M91 514 aa9.12□□□□□ -0.95
CCDC88A-213ENST00000476903 MRC1P22897 1456 aa9.12□□□□□ -0.95
CCDC88A-213ENST00000476903 TJP1Q07157 1748 aa9.11□□□□□ -0.95
CCDC88A-213ENST00000476903 U2SURPO15042 1029 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 167.8 ms