RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 LOC100289279A0A1B0GTE1 492 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 PCDH1Q08174 1060 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 ZNF423Q2M1K9 1284 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 XP32Q5T750 250 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 EPS8L3Q8TE67 593 aaKnown RBP8.47□□□□□ -1.05
PTCD3-211ENST00000476215 FBF1Q8TES7 1133 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 MYRFLQ96LU7 910 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 RUSC1Q9BVN2 902 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 ZNF576Q9H609 170 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 ABCB6Q9NP58 842 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 NLRP2Q9NX02 1062 aa8.47□□□□□ -1.05
PTCD3-211ENST00000476215 RBM47A0AV96 593 aaKnown RBP8.46□□□□□ -1.06
PTCD3-211ENST00000476215 DHX15O43143 795 aaKnown RBP8.46□□□□□ -1.06
PTCD3-211ENST00000476215 GADD45BO75293 160 aaPredicted RBP8.46□□□□□ -1.06
PTCD3-211ENST00000476215 B3GALT4O96024 378 aa8.46□□□□□ -1.06
PTCD3-211ENST00000476215 ZNF16P17020 682 aaPredicted RBP8.46□□□□□ -1.06
PTCD3-211ENST00000476215 FSTP19883 344 aa8.46□□□□□ -1.06
PTCD3-211ENST00000476215 SPRED3Q2MJR0 410 aa8.46□□□□□ -1.06
PTCD3-211ENST00000476215 PI16Q6UXB8 463 aa8.46□□□□□ -1.06
PTCD3-211ENST00000476215 SMG8Q8ND04 991 aaKnown RBP8.46□□□□□ -1.06
PTCD3-211ENST00000476215 GLIS3Q8NEA6 775 aa8.46□□□□□ -1.06
PTCD3-211ENST00000476215 DUSP9Q99956 384 aaKnown RBP8.46□□□□□ -1.06
PTCD3-211ENST00000476215 RNF112Q9ULX5 631 aa8.46□□□□□ -1.06
PTCD3-211ENST00000476215 HIF3AQ9Y2N7 669 aa8.46□□□□□ -1.06
PTCD3-211ENST00000476215 TIAF1O95411 115 aa8.45□□□□□ -1.06
PTCD3-211ENST00000476215 PREPP48147 710 aa8.45□□□□□ -1.06
PTCD3-211ENST00000476215 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.45□□□□□ -1.06
PTCD3-211ENST00000476215 RPS26P11Q5JNZ5 115 aaPredicted RBP8.45□□□□□ -1.06
PTCD3-211ENST00000476215 GSC2O15499 205 aa8.44□□□□□ -1.06
PTCD3-211ENST00000476215 DLGAP3O95886 979 aa8.44□□□□□ -1.06
PTCD3-211ENST00000476215 XPCQ01831 940 aaPredicted RBP8.44□□□□□ -1.06
PTCD3-211ENST00000476215 UTP4Q969X6 686 aaKnown RBP8.44□□□□□ -1.06
PTCD3-211ENST00000476215 EHD4Q9H223 541 aa8.44□□□□□ -1.06
PTCD3-211ENST00000476215 RNF19AQ9NV58 838 aa8.44□□□□□ -1.06
PTCD3-211ENST00000476215 PARP2Q9UGN5 583 aa8.44□□□□□ -1.06
PTCD3-211ENST00000476215 ARTNQ5T4W7 220 aa8.43□□□□□ -1.06
PTCD3-211ENST00000476215 FAM20CQ8IXL6 584 aa8.43□□□□□ -1.06
PTCD3-211ENST00000476215 TRIM56Q9BRZ2 755 aaKnown RBP8.43□□□□□ -1.06
PTCD3-211ENST00000476215 TRAK1Q9UPV9 953 aa8.43□□□□□ -1.06
PTCD3-211ENST00000476215 SPG7Q9UQ90 795 aa8.43□□□□□ -1.06
PTCD3-211ENST00000476215 LRP8Q14114 963 aa8.42□□□□□ -1.06
PTCD3-211ENST00000476215 GRM2Q14416 872 aa8.42□□□□□ -1.06
PTCD3-211ENST00000476215 EXOSC6Q5RKV6 272 aaKnown RBP8.42□□□□□ -1.06
PTCD3-211ENST00000476215 ZNF428Q96B54 188 aa8.42□□□□□ -1.06
PTCD3-211ENST00000476215 BCL11AQ9H165 835 aa8.42□□□□□ -1.06
PTCD3-211ENST00000476215 TMEM238LA0A1B0GVL6 79 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 IGLV1-40P01703 118 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 GNA15P30679 374 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 RBM25P49756 843 aaKnown RBP8.41□□□□□ -1.06
PTCD3-211ENST00000476215 GSTM4Q03013 218 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 PSMD2Q13200 908 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 FDX2Q6P4F2 183 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 CLEC10AQ8IUN9 316 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 FAM161BQ96MY7 647 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 FAM83CQ9BQN1 747 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 USP26Q9BXU7 913 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 STOML1Q9UBI4 398 aa8.41□□□□□ -1.06
PTCD3-211ENST00000476215 SYNGAP1Q96PV0 1343 aa8.4□□□□□ -1.06
PTCD3-211ENST00000476215 BCO2Q9BYV7 579 aa8.4□□□□□ -1.06
PTCD3-211ENST00000476215 C7orf69Q9H7B7 122 aa8.4□□□□□ -1.06
PTCD3-211ENST00000476215 CYP4F12Q9HCS2 524 aa8.4□□□□□ -1.06
PTCD3-211ENST00000476215 MRS2Q9HD23 443 aa8.4□□□□□ -1.06
PTCD3-211ENST00000476215 CYP11A1P05108 521 aa8.39□□□□□ -1.07
PTCD3-211ENST00000476215 DAB2P98082 770 aa8.39□□□□□ -1.07
PTCD3-211ENST00000476215 NUTM2GQ5VZR2 741 aa8.39□□□□□ -1.07
PTCD3-211ENST00000476215 RNF43Q68DV7 783 aa8.39□□□□□ -1.07
PTCD3-211ENST00000476215 NXPE4Q6UWF7 544 aa8.39□□□□□ -1.07
PTCD3-211ENST00000476215 FRMD6Q96NE9 622 aa8.39□□□□□ -1.07
PTCD3-211ENST00000476215 ZFYVE1Q9HBF4 777 aa8.39□□□□□ -1.07
PTCD3-211ENST00000476215 GIPC1O14908 333 aa8.38□□□□□ -1.07
PTCD3-211ENST00000476215 CTSBP07858 339 aa8.38□□□□□ -1.07
PTCD3-211ENST00000476215 XRCC5P13010 732 aaKnown RBP8.38□□□□□ -1.07
PTCD3-211ENST00000476215 HP1BP3Q5SSJ5 553 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-211ENST00000476215 TMC4Q7Z404 712 aa8.38□□□□□ -1.07
PTCD3-211ENST00000476215 DDX54Q8TDD1 881 aaKnown RBP8.38□□□□□ -1.07
PTCD3-211ENST00000476215 OSBPL7Q9BZF2 842 aa8.38□□□□□ -1.07
PTCD3-211ENST00000476215 ZFP64Q9NPA5 681 aa8.38□□□□□ -1.07
PTCD3-211ENST00000476215 PPP4R2Q9NY27 417 aa8.38□□□□□ -1.07
PTCD3-211ENST00000476215 UNCXA6NJT0 531 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 SART1O43290 800 aaKnown RBP8.37□□□□□ -1.07
PTCD3-211ENST00000476215 SORBS3O60504 671 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 BMP3P12645 472 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 EIF4BP23588 611 aaKnown RBP8.37□□□□□ -1.07
PTCD3-211ENST00000476215 MAOBP27338 520 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 FAAP100Q0VG06 881 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 NFIAQ12857 509 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 AP3B2Q13367 1082 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 POU4F3Q15319 338 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 ZDHHC13Q8IUH4 622 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 TRIM42Q8IWZ5 723 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 C2CD4AQ8NCU7 369 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-211ENST00000476215 DBNDD2Q9BQY9 259 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 GSX1Q9H4S2 264 aaPredicted RBP8.37□□□□□ -1.07
PTCD3-211ENST00000476215 C12orf49Q9H741 205 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 AK5Q9Y6K8 562 aa8.37□□□□□ -1.07
PTCD3-211ENST00000476215 HYAL3O43820 417 aaPredicted RBP8.36□□□□□ -1.07
PTCD3-211ENST00000476215 SOX4Q06945 474 aaPredicted RBP8.36□□□□□ -1.07
PTCD3-211ENST00000476215 BEND4Q6ZU67 534 aa8.36□□□□□ -1.07
PTCD3-211ENST00000476215 EZH1Q92800 747 aaPredicted RBP8.36□□□□□ -1.07
PTCD3-211ENST00000476215 MRRFQ96E11 262 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms