RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 GAS2L3Q86XJ1 694 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 CCDC88AQ3V6T2 1871 aa14.43□□□□□ -0.1
SYNE1-222ENST00000474655 GSG1L2A8MUP6 293 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 MBD4O95243 580 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 CTDNEP1O95476 244 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 XRCC6P12956 609 aaKnown RBP eCLIP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 GYS1P13807 737 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 CAVIN1Q6NZI2 390 aaKnown RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 IFNL3Q8IZI9 196 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 NSUN7Q8NE18 718 aaKnown RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 EPB41L4AQ9HCS5 686 aaPredicted RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 LRP2BPQ9P2M1 347 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 VPS37CA5D8V6 355 aaPredicted RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 PRC1O43663 620 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 JAK2O60674 1132 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 HMGN5P82970 282 aaKnown RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 ZSCAN23Q3MJ62 389 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 TMED8Q6PL24 325 aaPredicted RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 CDC37L1Q7L3B6 337 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 RALYLQ86SE5 291 aaKnown RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 TBC1D10CQ8IV04 446 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 CNBD1Q8NA66 436 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 NSFL1CQ9UNZ2 370 aaKnown RBP14.42□□□□□ -0.1
SYNE1-222ENST00000474655 CNPY2Q9Y2B0 182 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 MAST2Q6P0Q8 1798 aa14.42□□□□□ -0.1
SYNE1-222ENST00000474655 DTNBO60941 627 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 TRIM37O94972 964 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 CRY2Q49AN0 593 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 PRR5LQ6MZQ0 368 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 CHST3Q7LGC8 479 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 ARMT1Q9H993 441 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 GRPEL1Q9HAV7 217 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 TMEM63CQ9P1W3 806 aa14.41□□□□□ -0.1
SYNE1-222ENST00000474655 IGSF3O75054 1194 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 APPP05067 770 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 TRDNQ13061 729 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 GRAPQ13588 217 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 CSPP1Q1MSJ5 1256 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 PROM2Q8N271 834 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 CCDC24Q8N4L8 307 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 GRAPLQ8TC17 118 aaPredicted RBP14.4□□□□□ -0.1
SYNE1-222ENST00000474655 GDPD2Q9HCC8 539 aa14.4□□□□□ -0.1
SYNE1-222ENST00000474655 NCLP19338 710 aaKnown RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 UBE2HP62256 183 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 DNM1Q05193 864 aaKnown RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 VPS37DQ86XT2 251 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 LCORLQ8N3X6 602 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 IQSEC3Q9UPP2 1182 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 HPS5Q9UPZ3 1129 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 KIF3AQ9Y496 699 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 GADD45BO75293 160 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 CYP7A1P22680 504 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 HIBADHP31937 336 aaKnown RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 RBM6P78332 1123 aaKnown RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 FOXD4L6Q3SYB3 417 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 NAA16Q6N069 864 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 FOXD4L3Q6VB84 417 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 C15orf52Q6ZUT6 534 aaKnown RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 ADGRA1Q86SQ6 560 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 RGS22Q8NE09 1264 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 TMEM87BQ96K49 555 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 NACAP1Q9BZK3 213 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 NAPBQ9H115 298 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 GPHNQ9NQX3 736 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-222ENST00000474655 BRPF3Q9ULD4 1205 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 LEMD3Q9Y2U8 911 aa14.39□□□□□ -0.11
SYNE1-222ENST00000474655 ELP1O95163 1332 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 NRXN2Q9P2S2 1712 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 PTPDC1A2A3K4 754 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 PLSCR1O15162 318 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 KLRK1P26718 216 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 CCT2P78371 535 aaKnown RBP14.38□□□□□ -0.11
SYNE1-222ENST00000474655 TXNRD1Q16881 649 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 ZNF772Q68DY9 489 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-222ENST00000474655 CYB5R4Q7L1T6 521 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 KLHL34Q8N239 644 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 ZNF384Q8TF68 577 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 RIOK1Q9BRS2 568 aaKnown RBP14.38□□□□□ -0.11
SYNE1-222ENST00000474655 MTA3Q9BTC8 594 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 ZSCAN16Q9H4T2 348 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-222ENST00000474655 CNNM2Q9H8M5 875 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 ANGEL1Q9UNK9 670 aaKnown RBP14.38□□□□□ -0.11
SYNE1-222ENST00000474655 SLC4A4Q9Y6R1 1079 aa14.38□□□□□ -0.11
SYNE1-222ENST00000474655 KLRG2A4D1S0 409 aaPredicted RBP14.37□□□□□ -0.11
SYNE1-222ENST00000474655 NPHP1O15259 732 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 PRKAB2O43741 272 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 DHX16O60231 1041 aaKnown RBP14.37□□□□□ -0.11
SYNE1-222ENST00000474655 SERPINB2P05120 415 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 RESTQ13127 1097 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 AKNAD1Q5T1N1 836 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 FAM184AQ8NB25 1140 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 NKX2-3Q8TAU0 364 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 STAG1Q8WVM7 1258 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 NCOA5Q9HCD5 579 aaKnown RBP14.37□□□□□ -0.11
SYNE1-222ENST00000474655 RBM27Q9P2N5 1060 aaKnown RBP14.37□□□□□ -0.11
SYNE1-222ENST00000474655 ABCF2Q9UG63 623 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 ANAPC4Q9UJX5 808 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 NEDD4P46934 1319 aa14.37□□□□□ -0.11
SYNE1-222ENST00000474655 BAZ2AQ9UIF9 1905 aaKnown RBP14.37□□□□□ -0.11
SYNE1-222ENST00000474655 LRRC37AA6NMS7 1700 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms