RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PHLDB3Q6NSJ2 640 aa7.62□□□□□ -1.19
CCDC88A-212ENST00000474059 GJD3Q8N144 294 aa7.62□□□□□ -1.19
CCDC88A-212ENST00000474059 PAK6Q9NQU5 681 aaPredicted RBP7.62□□□□□ -1.19
CCDC88A-212ENST00000474059 POLR3DP05423 398 aaPredicted RBP7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 PCSK2P16519 638 aa7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 GSTM4Q03013 218 aa7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 PAOXQ6QHF9 649 aa7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 SEZ6L2Q6UXD5 910 aa7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 TCF12Q99081 682 aa7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 TRIM56Q9BRZ2 755 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 ZFYVE28Q9HCC9 887 aa7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 CCDC87Q9NVE4 849 aa7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 ANGEL1Q9UNK9 670 aaKnown RBP7.61□□□□□ -1.19
CCDC88A-212ENST00000474059 GRIA4P48058 902 aa7.6□□□□□ -1.19
CCDC88A-212ENST00000474059 SPRED3Q2MJR0 410 aa7.6□□□□□ -1.19
CCDC88A-212ENST00000474059 TBC1D32Q96NH3 1257 aa7.6□□□□□ -1.19
CCDC88A-212ENST00000474059 ACSS3Q9H6R3 686 aa7.6□□□□□ -1.19
CCDC88A-212ENST00000474059 ZC3H7BQ9UGR2 993 aaKnown RBP7.6□□□□□ -1.19
CCDC88A-212ENST00000474059 CYP26A1O43174 497 aa7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 CCNJLQ8IV13 435 aa7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 FBXL18Q96ME1 805 aa7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 METTL22Q9BUU2 404 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 SEMA6CQ9H3T2 930 aa7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 GSX1Q9H4S2 264 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 FAM105AQ9NUU6 356 aa7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 BSDC1Q9NW68 430 aaPredicted RBP7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 AMOTL2Q9Y2J4 779 aa7.59□□□□□ -1.19
CCDC88A-212ENST00000474059 A0A1W2PP55 124 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 DYNC1LI2O43237 492 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 NFICP08651 508 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 MAOBP27338 520 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 USP11P51784 963 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 PCDH1Q08174 1060 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 ZNF765Q7L2R6 523 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 GIMAP7Q8NHV1 300 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 C1GALT1Q9NS00 363 aa7.58□□□□□ -1.2
CCDC88A-212ENST00000474059 A0A096LPE4 126 aa7.57□□□□□ -1.2
CCDC88A-212ENST00000474059 A0A1W2PPZ6 126 aa7.57□□□□□ -1.2
CCDC88A-212ENST00000474059 ALKBH2Q6NS38 261 aa7.57□□□□□ -1.2
CCDC88A-212ENST00000474059 POU5F2Q8N7G0 328 aa7.57□□□□□ -1.2
CCDC88A-212ENST00000474059 CARNS1A5YM72 827 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 PAPLNO95428 1278 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 C8AP07357 584 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 LCE4AQ5TA78 99 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 USPL1Q5W0Q7 1092 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 TP53INP2Q8IXH6 220 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 GALNT12Q8IXK2 581 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 KRTAP4-9Q9BYQ8 210 aa7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 CLEC4MQ9H2X3 399 aaPredicted RBP7.56□□□□□ -1.2
CCDC88A-212ENST00000474059 EHHADHQ08426 723 aa7.55□□□□□ -1.2
CCDC88A-212ENST00000474059 ECM1Q16610 540 aa7.55□□□□□ -1.2
CCDC88A-212ENST00000474059 ZNF574Q6ZN55 896 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-212ENST00000474059 U3KQE9 123 aa7.55□□□□□ -1.2
CCDC88A-212ENST00000474059 RAB6AP20340 208 aa7.54□□□□□ -1.2
CCDC88A-212ENST00000474059 SPRED2Q7Z698 418 aa7.54□□□□□ -1.2
CCDC88A-212ENST00000474059 TTC16Q8NEE8 873 aa7.54□□□□□ -1.2
CCDC88A-212ENST00000474059 FLCNQ8NFG4 579 aa7.54□□□□□ -1.2
CCDC88A-212ENST00000474059 BCL7CQ8WUZ0 217 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-212ENST00000474059 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.54□□□□□ -1.2
CCDC88A-212ENST00000474059 CARMIL2Q6F5E8 1435 aa7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 ARID3CA6NKF2 412 aa7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 FAM13AO94988 1023 aa7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 B3GALT4O96024 378 aa7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 POU4F3Q15319 338 aa7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 CCDC97Q96F63 343 aaPredicted RBP7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 ANO2Q9NQ90 1003 aa7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 SERPINA10Q9UK55 444 aa7.53□□□□□ -1.2
CCDC88A-212ENST00000474059 JUNBP17275 347 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 USP5P45974 858 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 ZNF211Q13398 564 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 AKAP4Q5JQC9 854 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 DYMQ7RTS9 669 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 WDR18Q9BV38 432 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 ZNF576Q9H609 170 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 LIN7BQ9HAP6 207 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 LRRC4CQ9HCJ2 640 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 PPP1R9AQ9ULJ8 1098 aa7.52□□□□□ -1.21
CCDC88A-212ENST00000474059 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.51□□□□□ -1.21
CCDC88A-212ENST00000474059 FKBP4Q02790 459 aaKnown RBP eCLIP7.51□□□□□ -1.21
CCDC88A-212ENST00000474059 MAP7Q14244 749 aa7.51□□□□□ -1.21
CCDC88A-212ENST00000474059 ASIC4Q96FT7 647 aa7.51□□□□□ -1.21
CCDC88A-212ENST00000474059 YIPF2Q9BWQ6 316 aa7.51□□□□□ -1.21
CCDC88A-212ENST00000474059 ITPKAP23677 461 aa7.5□□□□□ -1.21
CCDC88A-212ENST00000474059 SF3B2Q13435 895 aaKnown RBP7.5□□□□□ -1.21
CCDC88A-212ENST00000474059 KIAA0319Q5VV43 1072 aa7.5□□□□□ -1.21
CCDC88A-212ENST00000474059 AP4E1Q9UPM8 1137 aa7.5□□□□□ -1.21
CCDC88A-212ENST00000474059 AOC2O75106 756 aa7.49□□□□□ -1.21
CCDC88A-212ENST00000474059 CYP11A1P05108 521 aa7.49□□□□□ -1.21
CCDC88A-212ENST00000474059 AAMPQ13685 434 aa7.49□□□□□ -1.21
CCDC88A-212ENST00000474059 OGFOD3Q6PK18 319 aa7.49□□□□□ -1.21
CCDC88A-212ENST00000474059 AGBL5Q8NDL9 886 aa7.49□□□□□ -1.21
CCDC88A-212ENST00000474059 WDR89Q96FK6 387 aaPredicted RBP7.49□□□□□ -1.21
CCDC88A-212ENST00000474059 IGHA2P01877 340 aa7.48□□□□□ -1.21
CCDC88A-212ENST00000474059 ASPAP45381 313 aa7.48□□□□□ -1.21
CCDC88A-212ENST00000474059 ZNF792Q3KQV3 632 aa7.48□□□□□ -1.21
CCDC88A-212ENST00000474059 DUSP27Q5VZP5 1158 aa7.48□□□□□ -1.21
CCDC88A-212ENST00000474059 KRTAP4-2Q9BYR5 136 aa7.48□□□□□ -1.21
CCDC88A-212ENST00000474059 TMPRSS2O15393 492 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 CYP27A1Q02318 531 aa7.47□□□□□ -1.21
CCDC88A-212ENST00000474059 BNIP3Q12983 259 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms