RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 SIK1P57059 783 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 ITPK1Q13572 414 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 DNAJC10Q8IXB1 793 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 UBR2Q8IWV8 1755 aa6.06□□□□□ -1.44
SF3B1-208ENST00000470268 SBF2Q86WG5 1849 aa6.05□□□□□ -1.44
SF3B1-208ENST00000470268 ATP5J2-PTCD1G3V325 749 aa6.05□□□□□ -1.44
SF3B1-208ENST00000470268 HOXB7P09629 217 aa6.05□□□□□ -1.44
SF3B1-208ENST00000470268 NCOA4Q13772 614 aa6.05□□□□□ -1.44
SF3B1-208ENST00000470268 PROSER3Q2NL68 480 aa6.05□□□□□ -1.44
SF3B1-208ENST00000470268 KCTD17Q8N5Z5 321 aa6.05□□□□□ -1.44
SF3B1-208ENST00000470268 LRRC4BQ9NT99 713 aa6.05□□□□□ -1.44
SF3B1-208ENST00000470268 FAM196BA6NMK8 535 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 PLIN1O60240 522 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 A1BGP04217 495 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 EML3Q32P44 896 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 NBPF10Q6P3W6 841 aaKnown RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 G2E3Q7L622 706 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 VASH1Q7L8A9 365 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 LRP10Q7Z4F1 713 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 DEPDC4Q8N2C3 294 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 NBPF15Q8N660 670 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 NANOS1Q8WY41 292 aaKnown RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 SMARCC1Q92922 1105 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 CHPF2Q9P2E5 772 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 MKRN1Q9UHC7 482 aaKnown RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 DNMT3LQ9UJW3 386 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 TNNQ9UQP3 1299 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 BTAF1O14981 1849 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 C5P01031 1676 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 SOS1Q07889 1333 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 RNF123Q5XPI4 1314 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 APBA3O96018 575 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 CYP19A1P11511 503 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 GSK3AP49840 483 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 ALDH1L2Q3SY69 923 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 CCDC116Q8IYX3 515 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 LINC00116Q8NCU8 138 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 ZNF428Q96B54 188 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 CCDC85AQ96PX6 553 aaPredicted RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 PHAXQ9H814 394 aaKnown RBP6.04□□□□□ -1.44
SF3B1-208ENST00000470268 SMC4Q9NTJ3 1288 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 PGPEP1Q9NXJ5 209 aa6.04□□□□□ -1.44
SF3B1-208ENST00000470268 TTLL8A6PVC2 850 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 PLSCR1O15162 318 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 GDF11O95390 407 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 FSHRP23945 695 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 RASSF7Q02833 373 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 CCDC30Q5VVM6 783 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 SMIM5Q71RC9 77 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 AMIGO3Q86WK7 504 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 CCNL1Q9UK58 526 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 NOB1Q9ULX3 412 aaKnown RBP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 DOLKQ9UPQ8 538 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 ZBTB1Q9Y2K1 713 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 TJP1Q07157 1748 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 MYL6BP14649 208 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 RRP1P56182 461 aaKnown RBP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 TXNRD1Q16881 649 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 TSGA10IPQ3SY00 556 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 C20orf194Q5TEA3 1177 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 INTS5Q6P9B9 1019 aaKnown RBP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 ILDR2Q71H61 639 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 TRIM50Q86XT4 487 aa6.03□□□□□ -1.44
SF3B1-208ENST00000470268 FRAT1Q92837 279 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 KCTD15Q96SI1 283 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 DDX21Q9NR30 783 aaKnown RBP eCLIP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 DBF4Q9UBU7 674 aaPredicted RBP6.03□□□□□ -1.44
SF3B1-208ENST00000470268 TMEM88BA6NKF7 163 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 RLBP1P12271 317 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 TRIM27P14373 513 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 CRKLP46109 303 aaKnown RBP6.02□□□□□ -1.45
SF3B1-208ENST00000470268 PTK7Q13308 1070 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 EZH2Q15910 746 aaKnown RBP6.02□□□□□ -1.45
SF3B1-208ENST00000470268 DEFB132Q7Z7B7 95 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 CNTNAP3BQ96NU0 1288 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 CAMKK2Q96RR4 588 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 STK31Q9BXU1 1019 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 TEX13AQ9BXU3 409 aaPredicted RBP6.02□□□□□ -1.45
SF3B1-208ENST00000470268 CNTNAP3Q9BZ76 1288 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 NOD1Q9Y239 953 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 TNS1Q9HBL0 1735 aaKnown RBP6.02□□□□□ -1.45
SF3B1-208ENST00000470268 KAT6BQ8WYB5 2073 aa6.02□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L15C9J2P7 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L10C9JJH3 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L13C9JLJ4 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L12C9JPN9 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L11C9JVI0 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L21D6R901 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L18D6R9N7 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L22D6RA61 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L17D6RBQ6 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L19D6RCP7 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L20D6RJB6 530 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 F6X3S4 739 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 STARD3NLO95772 234 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 RASA1P20936 1047 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 CANXP27824 592 aaKnown RBP6.01□□□□□ -1.45
SF3B1-208ENST00000470268 ATP1A2P50993 1020 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 PTSQ03393 145 aa6.01□□□□□ -1.45
SF3B1-208ENST00000470268 USP17L24Q0WX57 530 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms