RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 A0A1W2PQ64 194 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 A0A1W2PQD8 194 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 B4E1Z4 1266 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 H7C1W4 665 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 CYP27B1O15528 508 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 NLRP12P59046 1061 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 RABL6Q3YEC7 729 aaPredicted RBP12.01□□□□□ -0.49
PTPRE-205ENST00000463727 KLHL10Q6JEL2 608 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 OSBP2Q969R2 916 aa12.01□□□□□ -0.49
PTPRE-205ENST00000463727 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.01□□□□□ -0.49
PTPRE-205ENST00000463727 AP5Z1O43299 807 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 SMARCE1Q969G3 411 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 RGPD8O14715 1765 aaPredicted RBP12□□□□□ -0.49
PTPRE-205ENST00000463727 RFX7Q2KHR2 1363 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 TUBB4AP04350 444 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 FANCCQ00597 558 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 TCIRG1Q13488 830 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 STOX1Q6ZVD7 989 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 PEAK1Q9H792 1746 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 GNL3LQ9NVN8 582 aaKnown RBP12□□□□□ -0.49
PTPRE-205ENST00000463727 RAI14Q9P0K7 980 aa12□□□□□ -0.49
PTPRE-205ENST00000463727 M0R2C6 588 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 GTF2F1P35269 517 aaKnown RBP eCLIP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 ADD1P35611 737 aaKnown RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 IGHMBP2P38935 993 aaKnown RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 KRT40Q6A162 431 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 SARM1Q6SZW1 724 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 LINC00301Q8NCQ3 95 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 HELBQ8NG08 1087 aaPredicted RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 PHKBQ93100 1093 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 RNF41Q9H4P4 317 aaPredicted RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 GPHNQ9NQX3 736 aaPredicted RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 ZNF609O15014 1411 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 PFKFB1P16118 471 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 ITGA6P23229 1130 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 ADORA1P30542 326 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 BMS1Q14692 1282 aaKnown RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 WTAPQ15007 396 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 CNNM2Q9H8M5 875 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 ZNF215Q9UL58 517 aaPredicted RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 XRN1Q8IZH2 1706 aaKnown RBP11.99□□□□□ -0.49
PTPRE-205ENST00000463727 CIAO1O76071 339 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 ARID5BQ14865 1188 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 DPCR1Q3MIW9 517 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 KRT23Q9C075 422 aa11.99□□□□□ -0.49
PTPRE-205ENST00000463727 ERVV-2B6SEH9 535 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 IRS4O14654 1257 aaPredicted RBP11.98□□□□□ -0.49
PTPRE-205ENST00000463727 IPO7O95373 1038 aaKnown RBP11.98□□□□□ -0.49
PTPRE-205ENST00000463727 CMA1P23946 247 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 CASQ1P31415 396 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 RFX5P48382 616 aaPredicted RBP11.98□□□□□ -0.49
PTPRE-205ENST00000463727 GNG11P61952 73 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 RTN1Q16799 776 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 CCDC144BQ3MJ40 725 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 TMEM87BQ96K49 555 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 GOLPH3LQ9H4A5 285 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 RBM6P78332 1123 aaKnown RBP11.98□□□□□ -0.49
PTPRE-205ENST00000463727 UTP14AQ9BVJ6 771 aaKnown RBP11.98□□□□□ -0.49
PTPRE-205ENST00000463727 POLR3EQ9NVU0 708 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 GOLGA6L9A6NEM1 432 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 ELF2Q15723 593 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 KANK3Q6NY19 840 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 KRI1Q8N9T8 703 aaKnown RBP11.98□□□□□ -0.49
PTPRE-205ENST00000463727 ATG3Q9NT62 314 aa11.98□□□□□ -0.49
PTPRE-205ENST00000463727 TICAM2Q86XR7 235 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 TMX1Q9H3N1 280 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 FBXO3Q9UK99 471 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 KCNH3Q9ULD8 1083 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 GOLGA6L1Q8N7Z2 621 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 CPLX3Q8WVH0 158 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 MYL10Q9BUA6 226 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 HEG1Q9ULI3 1381 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 TXLNAP40222 546 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 EXOSC10Q01780 885 aaKnown RBP11.97□□□□□ -0.49
PTPRE-205ENST00000463727 DNAJC10Q8IXB1 793 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 TMTC2Q8N394 836 aa11.97□□□□□ -0.49
PTPRE-205ENST00000463727 ERICH4A6NGS2 130 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 IQCB1Q15051 598 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 ARHGAP29Q52LW3 1261 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 MAGEB6Q8N7X4 407 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 PCMTD1Q96MG8 357 aaPredicted RBP11.96□□□□□ -0.49
PTPRE-205ENST00000463727 SLC4A4Q9Y6R1 1079 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 RANBP6O60518 1105 aaKnown RBP11.96□□□□□ -0.49
PTPRE-205ENST00000463727 FOXO4P98177 505 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 ADAMTSL3P82987 1691 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 ZNF532Q9HCE3 1301 aa11.96□□□□□ -0.49
PTPRE-205ENST00000463727 CUTAO60888 179 aa11.96□□□□□ -0.5
PTPRE-205ENST00000463727 PI16Q6UXB8 463 aa11.96□□□□□ -0.5
PTPRE-205ENST00000463727 ATG9AQ7Z3C6 839 aa11.96□□□□□ -0.5
PTPRE-205ENST00000463727 IQCA1Q86XH1 822 aa11.96□□□□□ -0.5
PTPRE-205ENST00000463727 CCDC47Q96A33 483 aaKnown RBP11.96□□□□□ -0.5
PTPRE-205ENST00000463727 PUS7LQ9H0K6 701 aaKnown RBP11.96□□□□□ -0.5
PTPRE-205ENST00000463727 NPHP4O75161 1426 aaPredicted RBP11.96□□□□□ -0.5
PTPRE-205ENST00000463727 MBD4O95243 580 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 COL9A3Q14050 684 aaPredicted RBP11.95□□□□□ -0.5
PTPRE-205ENST00000463727 SLC39A14Q15043 492 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 FMR1NBQ8N0W7 255 aaPredicted RBP11.95□□□□□ -0.5
PTPRE-205ENST00000463727 SRRTQ9BXP5 876 aaKnown RBP11.95□□□□□ -0.5
PTPRE-205ENST00000463727 GJB4Q9NTQ9 266 aa11.95□□□□□ -0.5
PTPRE-205ENST00000463727 PCCAP05165 728 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms