RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 LEMD3Q9Y2U8 911 aa11.06□□□□□ -0.64
HDAC9-220ENST00000461409 VAMP4O75379 141 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 ITGA6P23229 1130 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 MMP14P50281 582 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 SCARF1Q14162 830 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 FAM161AQ3B820 660 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 OGFOD1Q8N543 542 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 CCDC102AQ96A19 550 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 GMLQ99445 158 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 ZBED2Q9BTP6 218 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 COA1Q9GZY4 146 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 MYOZ2Q9NPC6 264 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 VPS9D1Q9Y2B5 631 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 SALL2Q9Y467 1007 aaPredicted RBP11.05□□□□□ -0.64
HDAC9-220ENST00000461409 MYO3BQ8WXR4 1341 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 PITPNM2Q9BZ72 1349 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 SCN9AQ15858 1988 aa11.05□□□□□ -0.64
HDAC9-220ENST00000461409 MYH3P11055 1940 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 CSF1RP07333 972 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 KCNJ4P48050 445 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 CASP7P55210 303 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 EXOSC9Q06265 439 aaKnown RBP11.04□□□□□ -0.64
HDAC9-220ENST00000461409 STRIP1Q5VSL9 837 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 ANGEL2Q5VTE6 544 aaKnown RBP11.04□□□□□ -0.64
HDAC9-220ENST00000461409 RGMBQ6NW40 437 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 DDX12PQ92771 950 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 ZNF804BA4D1E1 1349 aa11.04□□□□□ -0.64
HDAC9-220ENST00000461409 ANKRD18BA2A2Z9 1011 aa11.03□□□□□ -0.64
HDAC9-220ENST00000461409 ZNF157P51786 506 aaPredicted RBP11.03□□□□□ -0.64
HDAC9-220ENST00000461409 FKBP1BP68106 108 aa11.03□□□□□ -0.64
HDAC9-220ENST00000461409 DACT2Q5SW24 774 aa11.03□□□□□ -0.64
HDAC9-220ENST00000461409 CDCA5Q96FF9 252 aa11.03□□□□□ -0.64
HDAC9-220ENST00000461409 CACNA1FO60840 1977 aa11.03□□□□□ -0.64
HDAC9-220ENST00000461409 WTIPA6NIX2 430 aaPredicted RBP11.02□□□□□ -0.65
HDAC9-220ENST00000461409 PPP1R3GB7ZBB8 358 aa11.02□□□□□ -0.65
HDAC9-220ENST00000461409 IFIT5Q13325 482 aaKnown RBP11.02□□□□□ -0.65
HDAC9-220ENST00000461409 DLK2Q6UY11 383 aa11.02□□□□□ -0.65
HDAC9-220ENST00000461409 ABHD8Q96I13 439 aa11.02□□□□□ -0.65
HDAC9-220ENST00000461409 ASTN2O75129 1339 aaPredicted RBP11.02□□□□□ -0.65
HDAC9-220ENST00000461409 PSME4Q14997 1843 aa11.02□□□□□ -0.65
HDAC9-220ENST00000461409 FAM155AB1AL88 458 aaPredicted RBP11.01□□□□□ -0.65
HDAC9-220ENST00000461409 F6X3S4 739 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 CHRNDQ07001 517 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 BEND3Q5T5X7 828 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 TTLL5Q6EMB2 1281 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 FAM9BQ8IZU0 186 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 KCNV2Q8TDN2 545 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 SAGE1Q9NXZ1 904 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 TSKSQ9UJT2 592 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 HDAC9Q9UKV0 1011 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 CHMP3Q9Y3E7 222 aa11.01□□□□□ -0.65
HDAC9-220ENST00000461409 SPEF2Q9C093 1822 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 GRM8O00222 908 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 SLC10A3P09131 477 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 COL9A1P20849 921 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 FOXO4P98177 505 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 CCDC57Q2TAC2 916 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 TAF7LQ5H9L4 462 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 TXNRD3Q86VQ6 643 aa11□□□□□ -0.65
HDAC9-220ENST00000461409 PAPPA2Q9BXP8 1791 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 WNT10BO00744 389 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 ALDH1L1O75891 902 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 KLRK1P26718 216 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 NF2P35240 595 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 KIF23Q02241 960 aaPredicted RBP10.99□□□□□ -0.65
HDAC9-220ENST00000461409 NBR1Q14596 966 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 NBPF9Q3BBW0 867 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 LMBR1LQ6UX01 489 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 C15orf52Q6ZUT6 534 aaKnown RBP10.99□□□□□ -0.65
HDAC9-220ENST00000461409 ZNF804AQ7Z570 1209 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 APOBEC3FQ8IUX4 373 aaKnown RBP10.99□□□□□ -0.65
HDAC9-220ENST00000461409 KCTD12Q96CX2 325 aaKnown RBP10.99□□□□□ -0.65
HDAC9-220ENST00000461409 ZIC5Q96T25 663 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 MXD3Q9BW11 206 aa10.99□□□□□ -0.65
HDAC9-220ENST00000461409 C9orf78Q9NZ63 289 aaPredicted RBP10.99□□□□□ -0.65
HDAC9-220ENST00000461409 BHMG1C9JSJ3 638 aaPredicted RBP10.98□□□□□ -0.65
HDAC9-220ENST00000461409 GTF2IP78347 998 aa10.98□□□□□ -0.65
HDAC9-220ENST00000461409 C6orf132Q5T0Z8 1188 aa10.98□□□□□ -0.65
HDAC9-220ENST00000461409 SLC4A10Q6U841 1118 aa10.98□□□□□ -0.65
HDAC9-220ENST00000461409 LDHAL6AQ6ZMR3 332 aa10.98□□□□□ -0.65
HDAC9-220ENST00000461409 KIAA0825Q8IV33 1275 aa10.98□□□□□ -0.65
HDAC9-220ENST00000461409 SRCIN1Q9C0H9 1055 aa10.98□□□□□ -0.65
HDAC9-220ENST00000461409 CD209Q9NNX6 404 aa10.98□□□□□ -0.65
HDAC9-220ENST00000461409 POLR2AP24928 1970 aaKnown RBP10.97□□□□□ -0.65
HDAC9-220ENST00000461409 TAF5LO75529 589 aa10.97□□□□□ -0.65
HDAC9-220ENST00000461409 SASH1O94885 1247 aa10.97□□□□□ -0.65
HDAC9-220ENST00000461409 TTLL12Q14166 644 aaPredicted RBP10.97□□□□□ -0.65
HDAC9-220ENST00000461409 RASAL3Q86YV0 1011 aa10.97□□□□□ -0.65
HDAC9-220ENST00000461409 HELBQ8NG08 1087 aaPredicted RBP10.97□□□□□ -0.65
HDAC9-220ENST00000461409 CNNM1Q9NRU3 951 aa10.97□□□□□ -0.65
HDAC9-220ENST00000461409 COL1A1P02452 1464 aaPredicted RBP10.96□□□□□ -0.65
HDAC9-220ENST00000461409 ZNF521Q96K83 1311 aa10.96□□□□□ -0.65
HDAC9-220ENST00000461409 IRS2Q9Y4H2 1338 aa10.96□□□□□ -0.65
HDAC9-220ENST00000461409 TRPA1O75762 1119 aa10.96□□□□□ -0.65
HDAC9-220ENST00000461409 IL1R1P14778 569 aa10.96□□□□□ -0.65
HDAC9-220ENST00000461409 FKBP1AP62942 108 aaKnown RBP10.96□□□□□ -0.65
HDAC9-220ENST00000461409 DLGAP5Q15398 846 aa10.96□□□□□ -0.65
HDAC9-220ENST00000461409 EPHA10Q5JZY3 1008 aa10.96□□□□□ -0.65
HDAC9-220ENST00000461409 CSRNP1Q96S65 589 aa10.96□□□□□ -0.65
HDAC9-220ENST00000461409 MCOLN1Q9GZU1 580 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms