RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 RXRBP28702 533 aa7.08□□□□□ -1.28
USP40-209ENST00000452724 EXOSC6Q5RKV6 272 aaKnown RBP7.08□□□□□ -1.28
USP40-209ENST00000452724 KIAA0319Q5VV43 1072 aa7.08□□□□□ -1.28
USP40-209ENST00000452724 INTS5Q6P9B9 1019 aaKnown RBP7.08□□□□□ -1.28
USP40-209ENST00000452724 DMRTB1Q96MA1 342 aa7.08□□□□□ -1.28
USP40-209ENST00000452724 ASB16Q96NS5 453 aa7.08□□□□□ -1.28
USP40-209ENST00000452724 YIPF2Q9BWQ6 316 aa7.08□□□□□ -1.28
USP40-209ENST00000452724 DNAJC25Q9H1X3 360 aa7.08□□□□□ -1.28
USP40-209ENST00000452724 EHD4Q9H223 541 aa7.08□□□□□ -1.28
USP40-209ENST00000452724 GPR182O15218 404 aa7.07□□□□□ -1.28
USP40-209ENST00000452724 IGHA2P01877 340 aa7.07□□□□□ -1.28
USP40-209ENST00000452724 MAP4P27816 1152 aaKnown RBP7.07□□□□□ -1.28
USP40-209ENST00000452724 CD97P48960 835 aa7.07□□□□□ -1.28
USP40-209ENST00000452724 USP11P51784 963 aa7.07□□□□□ -1.28
USP40-209ENST00000452724 TCF12Q99081 682 aa7.07□□□□□ -1.28
USP40-209ENST00000452724 TGFB1P01137 390 aa7.06□□□□□ -1.28
USP40-209ENST00000452724 MFAP1P55081 439 aaKnown RBP7.06□□□□□ -1.28
USP40-209ENST00000452724 ORC1Q13415 861 aa7.06□□□□□ -1.28
USP40-209ENST00000452724 DNAJC14Q6Y2X3 702 aaPredicted RBP7.06□□□□□ -1.28
USP40-209ENST00000452724 ZDHHC13Q8IUH4 622 aa7.06□□□□□ -1.28
USP40-209ENST00000452724 TREHO43280 583 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 GADD45BO75293 160 aaPredicted RBP7.05□□□□□ -1.28
USP40-209ENST00000452724 TIAF1O95411 115 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 GRIA4P48058 902 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 HNRNPUQ00839 825 aaKnown RBP eCLIP7.05□□□□□ -1.28
USP40-209ENST00000452724 POU4F3Q15319 338 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 SPRED3Q2MJR0 410 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 USPL1Q5W0Q7 1092 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 ALKBH8Q96BT7 664 aaKnown RBP7.05□□□□□ -1.28
USP40-209ENST00000452724 CORO1BQ9BR76 489 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 NIF3L1Q9GZT8 377 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 NPHS2Q9NP85 383 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 ATG3Q9NT62 314 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 TRAK1Q9UPV9 953 aa7.05□□□□□ -1.28
USP40-209ENST00000452724 ANKRD33BA6NCL7 494 aa7.04□□□□□ -1.28
USP40-209ENST00000452724 EIF1AYO14602 144 aaKnown RBP7.04□□□□□ -1.28
USP40-209ENST00000452724 PTPN12Q05209 780 aaKnown RBP7.04□□□□□ -1.28
USP40-209ENST00000452724 SGO2Q562F6 1265 aa7.04□□□□□ -1.28
USP40-209ENST00000452724 PAOXQ6QHF9 649 aa7.04□□□□□ -1.28
USP40-209ENST00000452724 SHKBP1Q8TBC3 707 aa7.04□□□□□ -1.28
USP40-209ENST00000452724 ZNF576Q9H609 170 aa7.04□□□□□ -1.28
USP40-209ENST00000452724 PODXL2Q9NZ53 605 aa7.04□□□□□ -1.28
USP40-209ENST00000452724 FAM95CA0A1B0GW59 222 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 KIAA1324LA8MWY0 1029 aaPredicted RBP7.03□□□□□ -1.28
USP40-209ENST00000452724 B3GALT4O96024 378 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 MAOBP27338 520 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 PLCB3Q01970 1234 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 SOX4Q06945 474 aaPredicted RBP7.03□□□□□ -1.28
USP40-209ENST00000452724 DSC3Q14574 896 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 ZNF423Q2M1K9 1284 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 CCDC74AQ96AQ1 378 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 RAD18Q9NS91 495 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 PPP4R2Q9NY27 417 aa7.03□□□□□ -1.28
USP40-209ENST00000452724 WDR64B1ANS9 1081 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 DLGAP3O95886 979 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 ERCC3P19447 782 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 ITPKAP23677 461 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 AP3B2Q13367 1082 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 CPSF6Q16630 551 aaKnown RBP eCLIP7.02□□□□□ -1.29
USP40-209ENST00000452724 RPS26P11Q5JNZ5 115 aaPredicted RBP7.02□□□□□ -1.29
USP40-209ENST00000452724 PRPF40BQ6NWY9 871 aaKnown RBP7.02□□□□□ -1.29
USP40-209ENST00000452724 MFSD14AQ96MC6 490 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 PSMG3-AS1Q96PY0 264 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 CSRNP1Q96S65 589 aa7.02□□□□□ -1.29
USP40-209ENST00000452724 CCDC9Q9Y3X0 531 aaKnown RBP7.02□□□□□ -1.29
USP40-209ENST00000452724 ADH5P11766 374 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 DRD2P14416 443 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 FMR1Q06787 632 aaKnown RBP eCLIP7.01□□□□□ -1.29
USP40-209ENST00000452724 NFKBIBQ15653 356 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 C2CD4AQ8NCU7 369 aaPredicted RBP7.01□□□□□ -1.29
USP40-209ENST00000452724 METTL22Q9BUU2 404 aaPredicted RBP7.01□□□□□ -1.29
USP40-209ENST00000452724 OSBPL1AQ9BXW6 950 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 NRSN2Q9GZP1 204 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 NLRP2Q9NX02 1062 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 PIM2Q9P1W9 311 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 LEMD3Q9Y2U8 911 aa7.01□□□□□ -1.29
USP40-209ENST00000452724 TMEM238LA0A1B0GVL6 79 aa7□□□□□ -1.29
USP40-209ENST00000452724 PRR19A6NJB7 356 aa7□□□□□ -1.29
USP40-209ENST00000452724 P4HBP07237 508 aaKnown RBP7□□□□□ -1.29
USP40-209ENST00000452724 MAP7Q14244 749 aa7□□□□□ -1.29
USP40-209ENST00000452724 PDE3AQ14432 1141 aa7□□□□□ -1.29
USP40-209ENST00000452724 NPAS4Q8IUM7 802 aa7□□□□□ -1.29
USP40-209ENST00000452724 FBXL6Q8N531 539 aa7□□□□□ -1.29
USP40-209ENST00000452724 FBLIM1Q8WUP2 373 aa7□□□□□ -1.29
USP40-209ENST00000452724 ABCB6Q9NP58 842 aa7□□□□□ -1.29
USP40-209ENST00000452724 PNMA6FA0A0J9YX94 578 aa6.99□□□□□ -1.29
USP40-209ENST00000452724 MAPK8P45983 427 aa6.99□□□□□ -1.29
USP40-209ENST00000452724 COL19A1Q14993 1142 aa6.99□□□□□ -1.29
USP40-209ENST00000452724 ENOX2Q16206 610 aaKnown RBP6.99□□□□□ -1.29
USP40-209ENST00000452724 AKAP4Q5JQC9 854 aa6.99□□□□□ -1.29
USP40-209ENST00000452724 DYMQ7RTS9 669 aa6.99□□□□□ -1.29
USP40-209ENST00000452724 EZH1Q92800 747 aaPredicted RBP6.99□□□□□ -1.29
USP40-209ENST00000452724 AP4E1Q9UPM8 1137 aa6.99□□□□□ -1.29
USP40-209ENST00000452724 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.98□□□□□ -1.29
USP40-209ENST00000452724 MED26O95402 600 aa6.98□□□□□ -1.29
USP40-209ENST00000452724 XRCC5P13010 732 aaKnown RBP6.98□□□□□ -1.29
USP40-209ENST00000452724 CDPF1Q6NVV7 123 aa6.98□□□□□ -1.29
USP40-209ENST00000452724 DTHD1Q6ZMT9 781 aa6.98□□□□□ -1.29
USP40-209ENST00000452724 DTX1Q86Y01 620 aa6.98□□□□□ -1.29
USP40-209ENST00000452724 TBC1D32Q96NH3 1257 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms