RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 TMEM238LA0A1B0GVL6 79 aa8.51□□□□□ -1.05
VPS50-206ENST00000443443 USP11P51784 963 aa8.51□□□□□ -1.05
VPS50-206ENST00000443443 ZNF157P51786 506 aaPredicted RBP8.51□□□□□ -1.05
VPS50-206ENST00000443443 KCNA1Q09470 495 aa8.51□□□□□ -1.05
VPS50-206ENST00000443443 SMG8Q8ND04 991 aaKnown RBP8.51□□□□□ -1.05
VPS50-206ENST00000443443 ZNF576Q9H609 170 aa8.51□□□□□ -1.05
VPS50-206ENST00000443443 RAD18Q9NS91 495 aa8.51□□□□□ -1.05
VPS50-206ENST00000443443 RNF112Q9ULX5 631 aa8.51□□□□□ -1.05
VPS50-206ENST00000443443 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.5□□□□□ -1.05
VPS50-206ENST00000443443 ITPKAP23677 461 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 NFIAQ12857 509 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 GRM2Q14416 872 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.5□□□□□ -1.05
VPS50-206ENST00000443443 NBPF11Q86T75 865 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 FAM83CQ9BQN1 747 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 CORO1BQ9BR76 489 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 KRTAP9-2Q9BYQ4 174 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 ZFYVE1Q9HBF4 777 aa8.5□□□□□ -1.05
VPS50-206ENST00000443443 PNMA6FA0A0J9YX94 578 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 HYAL3O43820 417 aaPredicted RBP8.49□□□□□ -1.05
VPS50-206ENST00000443443 MAP4P27816 1152 aaKnown RBP8.49□□□□□ -1.05
VPS50-206ENST00000443443 FCGRTP55899 365 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 LRP8Q14114 963 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 RNF43Q68DV7 783 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 PI16Q6UXB8 463 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 DTHD1Q6ZMT9 781 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 ZSCAN29Q8IWY8 852 aaPredicted RBP8.49□□□□□ -1.05
VPS50-206ENST00000443443 SUGCTQ9HAC7 445 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 ABCB6Q9NP58 842 aa8.49□□□□□ -1.05
VPS50-206ENST00000443443 B3GALT4O96024 378 aa8.48□□□□□ -1.05
VPS50-206ENST00000443443 SSTR4P31391 388 aa8.48□□□□□ -1.05
VPS50-206ENST00000443443 MAPK8P45983 427 aa8.48□□□□□ -1.05
VPS50-206ENST00000443443 SOX4Q06945 474 aaPredicted RBP8.48□□□□□ -1.05
VPS50-206ENST00000443443 SGO2Q562F6 1265 aa8.48□□□□□ -1.05
VPS50-206ENST00000443443 HP1BP3Q5SSJ5 553 aaPredicted RBP8.48□□□□□ -1.05
VPS50-206ENST00000443443 HIF3AQ9Y2N7 669 aa8.48□□□□□ -1.05
VPS50-206ENST00000443443 TREHO43280 583 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 PTPN12Q05209 780 aaKnown RBP8.47□□□□□ -1.05
VPS50-206ENST00000443443 PDE3AQ14432 1141 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 DSC3Q14574 896 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 NFKBIBQ15653 356 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS50-206ENST00000443443 AKAP4Q5JQC9 854 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 TRAIPQ9BWF2 469 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 BCO2Q9BYV7 579 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 PCMTD2Q9NV79 361 aa8.47□□□□□ -1.05
VPS50-206ENST00000443443 KRTAP9-6A0A140TA67 174 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 TIAF1O95411 115 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 ECEL1O95672 775 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 CTSBP07858 339 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 PRPF40BQ6NWY9 871 aaKnown RBP8.46□□□□□ -1.06
VPS50-206ENST00000443443 FBLIM1Q8WUP2 373 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 DBNDD2Q9BQY9 259 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 NRSN2Q9GZP1 204 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 AKAP2Q9Y2D5 859 aa8.46□□□□□ -1.06
VPS50-206ENST00000443443 FAM95CA0A1B0GW59 222 aa8.45□□□□□ -1.06
VPS50-206ENST00000443443 TGFB1P01137 390 aa8.45□□□□□ -1.06
VPS50-206ENST00000443443 RPS26P11Q5JNZ5 115 aaPredicted RBP8.45□□□□□ -1.06
VPS50-206ENST00000443443 NXPE4Q6UWF7 544 aa8.45□□□□□ -1.06
VPS50-206ENST00000443443 DYMQ7RTS9 669 aa8.45□□□□□ -1.06
VPS50-206ENST00000443443 FBXL6Q8N531 539 aa8.45□□□□□ -1.06
VPS50-206ENST00000443443 GLIS3Q8NEA6 775 aa8.45□□□□□ -1.06
VPS50-206ENST00000443443 MFSD14AQ96MC6 490 aa8.45□□□□□ -1.06
VPS50-206ENST00000443443 TRIM56Q9BRZ2 755 aaKnown RBP8.45□□□□□ -1.06
VPS50-206ENST00000443443 ZC3H12CQ9C0D7 883 aaKnown RBP8.45□□□□□ -1.06
VPS50-206ENST00000443443 GPN3Q9UHW5 284 aaPredicted RBP8.45□□□□□ -1.06
VPS50-206ENST00000443443 WDR64B1ANS9 1081 aa8.44□□□□□ -1.06
VPS50-206ENST00000443443 AP3B2Q13367 1082 aa8.44□□□□□ -1.06
VPS50-206ENST00000443443 ENOX2Q16206 610 aaKnown RBP8.44□□□□□ -1.06
VPS50-206ENST00000443443 CDPF1Q6NVV7 123 aa8.44□□□□□ -1.06
VPS50-206ENST00000443443 C2CD4AQ8NCU7 369 aaPredicted RBP8.44□□□□□ -1.06
VPS50-206ENST00000443443 YIPF2Q9BWQ6 316 aa8.44□□□□□ -1.06
VPS50-206ENST00000443443 PATL2C9JE40 543 aaKnown RBP8.43□□□□□ -1.06
VPS50-206ENST00000443443 ADH5P11766 374 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 PPP2R3AQ06190 1150 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 FAAP100Q0VG06 881 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 PAOXQ6QHF9 649 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 ZDHHC13Q8IUH4 622 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 AEBP1Q8IUX7 1158 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 GIMAP7Q8NHV1 300 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 SHKBP1Q8TBC3 707 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 AP4E1Q9UPM8 1137 aa8.43□□□□□ -1.06
VPS50-206ENST00000443443 COBLO75128 1261 aa8.42□□□□□ -1.06
VPS50-206ENST00000443443 RAB6AP20340 208 aa8.42□□□□□ -1.06
VPS50-206ENST00000443443 ASB16Q96NS5 453 aa8.42□□□□□ -1.06
VPS50-206ENST00000443443 ATG3Q9NT62 314 aa8.42□□□□□ -1.06
VPS50-206ENST00000443443 TMEM39AQ9NV64 488 aa8.42□□□□□ -1.06
VPS50-206ENST00000443443 AOC2O75106 756 aa8.41□□□□□ -1.06
VPS50-206ENST00000443443 XRCC5P13010 732 aaKnown RBP8.41□□□□□ -1.06
VPS50-206ENST00000443443 PDIA4P13667 645 aaKnown RBP8.41□□□□□ -1.06
VPS50-206ENST00000443443 LIG1P18858 919 aa8.41□□□□□ -1.06
VPS50-206ENST00000443443 GRIK1P39086 918 aa8.41□□□□□ -1.06
VPS50-206ENST00000443443 ASPAP45381 313 aa8.41□□□□□ -1.06
VPS50-206ENST00000443443 WWC3Q9ULE0 1092 aa8.41□□□□□ -1.06
VPS50-206ENST00000443443 ACTL7BQ9Y614 415 aa8.41□□□□□ -1.06
VPS50-206ENST00000443443 NFICP08651 508 aa8.4□□□□□ -1.06
VPS50-206ENST00000443443 ATP2B2Q01814 1243 aa8.4□□□□□ -1.06
VPS50-206ENST00000443443 KCNB2Q92953 911 aa8.4□□□□□ -1.06
VPS50-206ENST00000443443 MED26O95402 600 aa8.39□□□□□ -1.07
VPS50-206ENST00000443443 SLFN14P0C7P3 912 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms