RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 C6orf50Q9HD87 102 aa18.4■□□□□ 0.54
RIF1-204ENST00000430328 CCDC124Q96CT7 223 aaKnown RBP18.4■□□□□ 0.54
RIF1-204ENST00000430328 ORC6Q9Y5N6 252 aa18.4■□□□□ 0.54
RIF1-204ENST00000430328 ZPR1O75312 459 aa18.4■□□□□ 0.54
RIF1-204ENST00000430328 MRPS27Q92552 414 aaKnown RBP18.4■□□□□ 0.54
RIF1-204ENST00000430328 RBSNQ9H1K0 784 aa18.4■□□□□ 0.54
RIF1-204ENST00000430328 NEK1Q96PY6 1258 aa18.39■□□□□ 0.54
RIF1-204ENST00000430328 SLC12A2P55011 1212 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 CASC4Q6P4E1 433 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 NUCKS1Q9H1E3 243 aaKnown RBP18.39■□□□□ 0.53
RIF1-204ENST00000430328 KRT15P19012 456 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 TRIM6Q9C030 488 aaPredicted RBP18.39■□□□□ 0.53
RIF1-204ENST00000430328 CTTNBP2NLQ9P2B4 639 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 PPP2R5DQ14738 602 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 ATP2B3Q16720 1220 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 VTI1AQ96AJ9 217 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 KRT5P13647 590 aa18.39■□□□□ 0.53
RIF1-204ENST00000430328 ABTB1Q969K4 478 aaPredicted RBP18.39■□□□□ 0.53
RIF1-204ENST00000430328 TMED1Q13445 227 aa18.38■□□□□ 0.53
RIF1-204ENST00000430328 ESCO1Q5FWF5 840 aa18.38■□□□□ 0.53
RIF1-204ENST00000430328 NAPGQ99747 312 aaPredicted RBP18.38■□□□□ 0.53
RIF1-204ENST00000430328 RTL1A6NKG5 1358 aa18.38■□□□□ 0.53
RIF1-204ENST00000430328 DNAJC25Q9H1X3 360 aa18.38■□□□□ 0.53
RIF1-204ENST00000430328 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.38■□□□□ 0.53
RIF1-204ENST00000430328 SMARCA5O60264 1052 aaPredicted RBP18.38■□□□□ 0.53
RIF1-204ENST00000430328 VWA3BQ502W6 1294 aa18.38■□□□□ 0.53
RIF1-204ENST00000430328 NUDCD3Q8IVD9 361 aa18.38■□□□□ 0.53
RIF1-204ENST00000430328 AKR1B15C9JRZ8 316 aaPredicted RBP18.37■□□□□ 0.53
RIF1-204ENST00000430328 PROCA1Q8NCQ7 364 aaPredicted RBP18.37■□□□□ 0.53
RIF1-204ENST00000430328 NLRP7Q8WX94 980 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 NRBF2Q96F24 287 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 SERPINB6P35237 376 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 SESN3P58005 492 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 MTMR3Q13615 1198 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 MAN1A2O60476 641 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 TMTC2Q8N394 836 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 RNF34Q969K3 372 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 CAPN7Q9Y6W3 813 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 MAN1A1P33908 653 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 EPS15L1Q9UBC2 864 aa18.37■□□□□ 0.53
RIF1-204ENST00000430328 PLCB4Q15147 1175 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 TRIM60Q495X7 471 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 ANLNQ9NQW6 1124 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 IFIT1BQ5T764 474 aaKnown RBP18.36■□□□□ 0.53
RIF1-204ENST00000430328 SPC25Q9HBM1 224 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 ANKRD30BQ9BXX2 1392 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 RAPGEF1Q13905 1077 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 SPATS2Q86XZ4 545 aaKnown RBP18.36■□□□□ 0.53
RIF1-204ENST00000430328 U2AF2P26368 475 aaKnown RBP eCLIP18.36■□□□□ 0.537e-7■■■■□ 21.1
RIF1-204ENST00000430328 ALG1Q9BT22 464 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 KLHL14Q9P2G3 628 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 SOGA1O94964 1423 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 PPFIA3O75145 1194 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 SERPINI2O75830 405 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 RPL13P26373 211 aaKnown RBP18.36■□□□□ 0.53
RIF1-204ENST00000430328 LONP1P36776 959 aaKnown RBP18.36■□□□□ 0.53
RIF1-204ENST00000430328 WTAPQ15007 396 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 WDR44Q5JSH3 913 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 USP6NLQ92738 828 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 ASIC3Q9UHC3 531 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 TYRO3Q06418 890 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 TMTC4Q5T4D3 741 aa18.36■□□□□ 0.53
RIF1-204ENST00000430328 FNBP4Q8N3X1 1017 aaPredicted RBP18.36■□□□□ 0.53
RIF1-204ENST00000430328 DCAF17Q5H9S7 520 aaPredicted RBP18.35■□□□□ 0.53
RIF1-204ENST00000430328 CLSTN2Q9H4D0 955 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 KRT9P35527 623 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 NXNQ6DKJ4 435 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 RABEP2Q9H5N1 569 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 NBPF6Q5VWK0 638 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 NSMCE1Q8WV22 266 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 NBPF4Q96M43 638 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 ZKSCAN3Q9BRR0 538 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 IFNKQ9P0W0 207 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 ZRANB2O95218 330 aaKnown RBP eCLIP18.35■□□□□ 0.535e-9■■■■■ 100.6
RIF1-204ENST00000430328 MRFAP1L1Q96HT8 127 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 TBC1D8O95759 1140 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 STX8Q9UNK0 236 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 RPGRQ92834 1020 aaKnown RBP18.35■□□□□ 0.53
RIF1-204ENST00000430328 EFCC1Q9HA90 598 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 NUB1Q9Y5A7 615 aa18.35■□□□□ 0.53
RIF1-204ENST00000430328 TTC4O95801 387 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 LIN9Q5TKA1 542 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 HNRNPCL2B2RXH8 293 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 B4DLN1 442 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 HNRNPCL1O60812 293 aaKnown RBP18.34■□□□□ 0.53
RIF1-204ENST00000430328 MRPL12P52815 198 aaKnown RBP18.34■□□□□ 0.53
RIF1-204ENST00000430328 USP48Q86UV5 1035 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 PAWRQ96IZ0 340 aaKnown RBP18.34■□□□□ 0.53
RIF1-204ENST00000430328 CALM1P0DP23 149 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 CALM2P0DP24 149 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 CALM3P0DP25 149 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 HEATR3Q7Z4Q2 680 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 LRGUKQ96M69 825 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 ZBTB43O43298 467 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 PAK2Q13177 524 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 ZNF710Q8N1W2 664 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 PARP2Q9UGN5 583 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 SATB2Q9UPW6 733 aa18.34■□□□□ 0.53
RIF1-204ENST00000430328 ZBTB12Q9Y330 459 aaPredicted RBP18.34■□□□□ 0.53
RIF1-204ENST00000430328 CNPY2Q9Y2B0 182 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms