RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ATXN7L1Q9ULK2 861 aaPredicted RBP5.9□□□□□ -1.46
HMGB3-203ENST00000430118 PHF24Q9UPV7 400 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 EFR3BQ9Y2G0 817 aa5.9□□□□□ -1.46
HMGB3-203ENST00000430118 FANCAO15360 1455 aa5.9□□□□□ -1.47
HMGB3-203ENST00000430118 K7ELQ4 463 aaPredicted RBP5.89□□□□□ -1.47
HMGB3-203ENST00000430118 CLSTN1O94985 981 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 GRIN2CQ14957 1233 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 SNAP47Q5SQN1 464 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 PCNX4Q63HM2 1172 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 FBXL19Q6PCT2 694 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 TREML4Q6UXN2 200 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 TPTE2Q6XPS3 522 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 FAM196AQ6ZSG2 479 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 KRT25Q7Z3Z0 450 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 TRIM42Q8IWZ5 723 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 TRIM22Q8IYM9 498 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 TRPM4Q8TD43 1214 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 GINM1Q9NU53 330 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 DISP1Q96F81 1524 aa5.89□□□□□ -1.47
HMGB3-203ENST00000430118 RIMS1Q86UR5 1692 aaKnown RBP5.88□□□□□ -1.47
HMGB3-203ENST00000430118 A0A096LPE4 126 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 A0A1W2PPZ6 126 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 DCDC2BA2VCK2 349 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 SLC35F4A4IF30 521 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 MINDY4BA8MYZ0 360 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 C11orf95C9JLR9 678 aaPredicted RBP5.88□□□□□ -1.47
HMGB3-203ENST00000430118 NFKBIEO00221 500 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 ENC1O14682 589 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 U2SURPO15042 1029 aaKnown RBP5.88□□□□□ -1.47
HMGB3-203ENST00000430118 PPM1GO15355 546 aaPredicted RBP5.88□□□□□ -1.47
HMGB3-203ENST00000430118 KLF4O43474 513 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 MAN1A2O60476 641 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 EIF4EBP3O60516 100 aaPredicted RBP5.88□□□□□ -1.47
HMGB3-203ENST00000430118 THBS1P07996 1170 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 BMP1P13497 986 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 HSD3B2P26439 372 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 GRIA4P48058 902 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 PPP2R3AQ06190 1150 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 APOBRQ0VD83 1088 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 CAMK2GQ13555 558 aaPredicted RBP5.88□□□□□ -1.47
HMGB3-203ENST00000430118 RAB33AQ14088 237 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 TTBK2Q6IQ55 1244 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 OR6P1Q8NGX9 317 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 NKD1Q969G9 470 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 NXPE3Q969Y0 559 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 TRIM56Q9BRZ2 755 aaKnown RBP5.88□□□□□ -1.47
HMGB3-203ENST00000430118 RBSNQ9H1K0 784 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 ZNF576Q9H609 170 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 PRKAG3Q9UGI9 489 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 CARMIL1Q5VZK9 1371 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 GOLGA3Q08378 1498 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 NEO1Q92859 1461 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 ARHGEF40Q8TER5 1519 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 UGGT2Q9NYU1 1516 aa5.88□□□□□ -1.47
HMGB3-203ENST00000430118 ENPP3O14638 875 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 PF4P02776 101 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 BMS1Q14692 1282 aaKnown RBP5.87□□□□□ -1.47
HMGB3-203ENST00000430118 COL13A1Q5TAT6 717 aaPredicted RBP5.87□□□□□ -1.47
HMGB3-203ENST00000430118 RIPOR1Q6ZS17 1223 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 NLGN1Q8N2Q7 840 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 GOLM1Q8NBJ4 401 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 SRRTQ9BXP5 876 aaKnown RBP5.87□□□□□ -1.47
HMGB3-203ENST00000430118 PBX4Q9BYU1 374 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 TRIM55Q9BYV6 548 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 AVENQ9NQS1 362 aaPredicted RBP5.87□□□□□ -1.47
HMGB3-203ENST00000430118 SEC31BQ9NQW1 1179 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 TMEM39AQ9NV64 488 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 CYP8B1Q9UNU6 501 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 IGF1RP08069 1367 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 IQSEC2Q5JU85 1478 aa5.87□□□□□ -1.47
HMGB3-203ENST00000430118 LOC102724428A0A0B4J2F2 783 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 PDE2AO00408 941 aaPredicted RBP5.86□□□□□ -1.47
HMGB3-203ENST00000430118 BNIP3LO60238 219 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 CELA3AP09093 270 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 IMPDH2P12268 514 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 SIK1P57059 783 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 MPP2Q14168 576 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 LRRC14Q15048 493 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 LCE2AQ5TA79 106 aaPredicted RBP5.86□□□□□ -1.47
HMGB3-203ENST00000430118 ANKS3Q6ZW76 656 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 REXO1Q8N1G1 1221 aaKnown RBP5.86□□□□□ -1.47
HMGB3-203ENST00000430118 CACTIN-AS1Q8N1I8 211 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 GATAD2BQ8WXI9 593 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 BRINP2Q9C0B6 783 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 CLEC4MQ9H2X3 399 aaPredicted RBP5.86□□□□□ -1.47
HMGB3-203ENST00000430118 STRN4Q9NRL3 753 aa5.86□□□□□ -1.47
HMGB3-203ENST00000430118 R3HCC1Q9Y3T6 440 aaKnown RBP5.86□□□□□ -1.47
HMGB3-203ENST00000430118 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.86□□□□□ -1.47
HMGB3-203ENST00000430118 CFAP74Q9C0B2 1584 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 AKNAQ7Z591 1439 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 FBXO24O75426 580 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 SMNDC1O75940 238 aaKnown RBP eCLIP5.85□□□□□ -1.47
HMGB3-203ENST00000430118 TFE3P19532 575 aaPredicted RBP5.85□□□□□ -1.47
HMGB3-203ENST00000430118 LMNB1P20700 586 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 PTSQ03393 145 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 CWF19L2Q2TBE0 894 aaKnown RBP5.85□□□□□ -1.47
HMGB3-203ENST00000430118 JAZF1Q86VZ6 243 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 CPLX3Q8WVH0 158 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 BSNDQ8WZ55 320 aa5.85□□□□□ -1.47
HMGB3-203ENST00000430118 BHMTQ93088 406 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms