RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CFAP45Q9UL16 551 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 CALM1P0DP23 149 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 CALM2P0DP24 149 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 CALM3P0DP25 149 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 GYS1P13807 737 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 KCNQ4P56696 695 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 KRT85P78386 507 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 ATL3Q6DD88 541 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 ZNF589Q86UQ0 364 aaPredicted RBP9.85□□□□□ -0.83
USP54-203ENST00000418501 CCDC125Q86Z20 511 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 SP8Q8IXZ3 490 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 KLHL34Q8N239 644 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 MASTLQ96GX5 879 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 AK9Q5TCS8 1911 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 E7EWF7 191 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 PPEF1O14829 653 aaPredicted RBP9.85□□□□□ -0.83
USP54-203ENST00000418501 CYP2E1P05181 493 aaPredicted RBP9.85□□□□□ -0.83
USP54-203ENST00000418501 SOGA3Q5TF21 947 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 CCDC129Q6ZRS4 1044 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 C15orf52Q6ZUT6 534 aaKnown RBP9.85□□□□□ -0.83
USP54-203ENST00000418501 SUGT1Q9Y2Z0 365 aa9.85□□□□□ -0.83
USP54-203ENST00000418501 GOLGA6L3A6NEY3 463 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 PRC1O43663 620 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 GJB2P29033 226 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 RASEFQ8IZ41 740 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 OSBP2Q969R2 916 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 TTC14Q96N46 770 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 BCL2L12Q9HB09 334 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 RREB1Q92766 1687 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 ZSCAN22P10073 491 aaPredicted RBP9.84□□□□□ -0.83
USP54-203ENST00000418501 FBXO33Q7Z6M2 555 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 MPNDQ8N594 471 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 BRF1Q92994 677 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 SCAND2PQ9GZW5 306 aaPredicted RBP9.84□□□□□ -0.83
USP54-203ENST00000418501 ATP8A2Q9NTI2 1148 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 ARPP21Q9UBL0 812 aaPredicted RBP9.84□□□□□ -0.83
USP54-203ENST00000418501 RGS22Q8NE09 1264 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 SLC16A10Q8TF71 515 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 CELF1Q92879 486 aaKnown RBP9.84□□□□□ -0.83
USP54-203ENST00000418501 BRMS1Q9HCU9 246 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 PIH1D3Q9NQM4 214 aaKnown RBP9.84□□□□□ -0.83
USP54-203ENST00000418501 SLC12A7Q9Y666 1083 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 M0R2C6 588 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 BAG4O95429 457 aaKnown RBP9.84□□□□□ -0.83
USP54-203ENST00000418501 ZRSR1Q15695 479 aaKnown RBP9.84□□□□□ -0.83
USP54-203ENST00000418501 ZNF622Q969S3 477 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP54-203ENST00000418501 TRIM34Q9BYJ4 488 aa9.84□□□□□ -0.83
USP54-203ENST00000418501 IFIT3O14879 490 aaKnown RBP9.83□□□□□ -0.84
USP54-203ENST00000418501 FGAP02671 866 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 CYP21A2P08686 494 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 POLD1P28340 1107 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 HOXA10P31260 410 aaPredicted RBP9.83□□□□□ -0.84
USP54-203ENST00000418501 GYG1P46976 350 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 DPP8Q6V1X1 898 aaPredicted RBP9.83□□□□□ -0.84
USP54-203ENST00000418501 IFNL3Q8IZI9 196 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 COA1Q9GZY4 146 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 RBM27Q9P2N5 1060 aaKnown RBP9.83□□□□□ -0.84
USP54-203ENST00000418501 NUP98P52948 1817 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 TMEM67Q5HYA8 995 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 CLEC17AQ6ZS10 378 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 PFKFB2O60825 505 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 AKNAD1Q5T1N1 836 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 FBXW7Q969H0 707 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 STRBPQ96SI9 672 aaKnown RBP9.83□□□□□ -0.84
USP54-203ENST00000418501 BTAF1O14981 1849 aa9.83□□□□□ -0.84
USP54-203ENST00000418501 GOLGA8BA8MQT2 603 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 RCAN1P53805 252 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 SEC62Q99442 399 aaKnown RBP9.82□□□□□ -0.84
USP54-203ENST00000418501 ANGEL1Q9UNK9 670 aaKnown RBP9.82□□□□□ -0.84
USP54-203ENST00000418501 NDUFB9Q9Y6M9 179 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 TM4SF1P30408 202 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 RRP12Q5JTH9 1297 aaKnown RBP9.82□□□□□ -0.84
USP54-203ENST00000418501 FAM84BQ96KN1 310 aaPredicted RBP9.82□□□□□ -0.84
USP54-203ENST00000418501 BRD1O95696 1058 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 WTAPQ15007 396 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 STYK1Q6J9G0 422 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 CATIPQ7Z7H3 387 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 GTF3C6Q969F1 213 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 ARMT1Q9H993 441 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 SALL1Q9NSC2 1324 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 MINDY4BA8MYZ0 360 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 POLR3DP05423 398 aaPredicted RBP9.82□□□□□ -0.84
USP54-203ENST00000418501 METAP2P50579 478 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP54-203ENST00000418501 STK3Q13188 491 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 JMYQ8N9B5 988 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 TAOK2Q9UL54 1235 aa9.82□□□□□ -0.84
USP54-203ENST00000418501 ZBTB43O43298 467 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 KIF5BP33176 963 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 GNAQP50148 359 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 C2CD5Q86YS7 1000 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 FBXL16Q8N461 479 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 PUS7LQ9H0K6 701 aaKnown RBP9.81□□□□□ -0.84
USP54-203ENST00000418501 C4BP0C0L5 1744 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 KLF18A0A0U1RQI7 1052 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 GOLGA8AA7E2F4 631 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 MMP10P09238 476 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 HAND2P61296 217 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 SF3A1Q15459 793 aaKnown RBP9.81□□□□□ -0.84
USP54-203ENST00000418501 KLHL40Q2TBA0 621 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 ZNF444Q8N0Y2 327 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms