RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 CCDC12Q8WUD4 166 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-211ENST00000413186 CLEC11AQ9Y240 323 aa9.93□□□□□ -0.82
SYNE1-211ENST00000413186 CALM1P0DP23 149 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 CALM2P0DP24 149 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 CALM3P0DP25 149 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 TXLNAP40222 546 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 KRT85P78386 507 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 DPY19L2Q6NUT2 758 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 ARHGAP27Q6ZUM4 889 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 SPON1Q9HCB6 807 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 TTF2Q9UNY4 1162 aaKnown RBP9.92□□□□□ -0.82
SYNE1-211ENST00000413186 CRAMP1Q96RY5 1269 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 AHDC1Q5TGY3 1603 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-211ENST00000413186 RGS12O14924 1447 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 SASH1O94885 1247 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 ZBTB7AO95365 584 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 METAP2P50579 478 aaKnown RBP eCLIP9.92□□□□□ -0.82
SYNE1-211ENST00000413186 SSRP1Q08945 709 aaKnown RBP9.92□□□□□ -0.82
SYNE1-211ENST00000413186 IFIT1BQ5T764 474 aaKnown RBP9.92□□□□□ -0.82
SYNE1-211ENST00000413186 DSCC1Q9BVC3 393 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 COA1Q9GZY4 146 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 RBM27Q9P2N5 1060 aaKnown RBP9.92□□□□□ -0.82
SYNE1-211ENST00000413186 CFAP45Q9UL16 551 aa9.92□□□□□ -0.82
SYNE1-211ENST00000413186 PDE6AP16499 860 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 IARSP41252 1262 aaKnown RBP9.91□□□□□ -0.82
SYNE1-211ENST00000413186 TNFAIP1Q13829 316 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 DHX32Q7L7V1 743 aaKnown RBP9.91□□□□□ -0.82
SYNE1-211ENST00000413186 USP26Q9BXU7 913 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 ARMT1Q9H993 441 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 ZBTB43O43298 467 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 KDM4AO75164 1064 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 ATP2B1P20020 1258 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 EZH2Q15910 746 aaKnown RBP9.91□□□□□ -0.82
SYNE1-211ENST00000413186 BRF1Q92994 677 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 PRC1O43663 620 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 FOXO4P98177 505 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 PRR5LQ6MZQ0 368 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 RTL9Q8NET4 1388 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 UTYO14607 1347 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 ADORA1P30542 326 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 DDX11Q96FC9 970 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 C8orf76Q96K31 380 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 MINPP1Q9UNW1 487 aa9.91□□□□□ -0.82
SYNE1-211ENST00000413186 KLF18A0A0U1RQI7 1052 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 NTSR2O95665 410 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 FAM227BQ96M60 508 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 SH2D4AQ9H788 454 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 AATFQ9NY61 560 aaKnown RBP eCLIP9.9□□□□□ -0.82
SYNE1-211ENST00000413186 CSF1RP07333 972 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 DOK7Q18PE1 504 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 MICU3Q86XE3 530 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 SP8Q8IXZ3 490 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 LTN1O94822 1766 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 IGSF3O75054 1194 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 MCM4P33991 863 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 HSP90AA2PQ14568 343 aaPredicted RBP9.9□□□□□ -0.82
SYNE1-211ENST00000413186 SYNE4Q8N205 404 aa9.9□□□□□ -0.82
SYNE1-211ENST00000413186 TMEM87BQ96K49 555 aa9.9□□□□□ -0.83
SYNE1-211ENST00000413186 CELF1Q92879 486 aaKnown RBP9.89□□□□□ -0.83
SYNE1-211ENST00000413186 ARPP21Q9UBL0 812 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-211ENST00000413186 CEP131Q9UPN4 1083 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 DEFB132Q7Z7B7 95 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 CUL5Q93034 780 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 SNX21Q969T3 373 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 CCT2P78371 535 aaKnown RBP9.89□□□□□ -0.83
SYNE1-211ENST00000413186 R3HDM1Q15032 1099 aaKnown RBP9.89□□□□□ -0.83
SYNE1-211ENST00000413186 RTN1Q16799 776 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 SLC4A8Q2Y0W8 1093 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 TBC1D2Q9BYX2 928 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 TAOK3Q9H2K8 898 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 EHMT1Q9H9B1 1298 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 NDUFB9Q9Y6M9 179 aa9.89□□□□□ -0.83
SYNE1-211ENST00000413186 SLIT2O94813 1529 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 GSPT1P15170 499 aaKnown RBP9.88□□□□□ -0.83
SYNE1-211ENST00000413186 CCDC129Q6ZRS4 1044 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 Q6ZUG5 572 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 PODNQ7Z5L7 613 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 MAP7D2Q96T17 732 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 USP40Q9NVE5 1235 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 ORC3Q9UBD5 711 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-211ENST00000413186 SLC10A5Q5PT55 438 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 EDC3Q96F86 508 aaKnown RBP9.88□□□□□ -0.83
SYNE1-211ENST00000413186 CDK5RAP3Q96JB5 506 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 RBM25P49756 843 aaKnown RBP9.88□□□□□ -0.83
SYNE1-211ENST00000413186 TPD52L1Q16890 204 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-211ENST00000413186 RUFY3Q7L099 469 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 SDF4Q9BRK5 362 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 SHPRHQ149N8 1683 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 BECN2A8MW95 431 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 FIBPO43427 364 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 KINO60870 393 aaKnown RBP9.88□□□□□ -0.83
SYNE1-211ENST00000413186 GYS1P13807 737 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 KIAA0825Q8IV33 1275 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 ATP8A2Q9NTI2 1148 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 TLR7Q9NYK1 1049 aaKnown RBP9.88□□□□□ -0.83
SYNE1-211ENST00000413186 ABCC12Q96J65 1359 aa9.88□□□□□ -0.83
SYNE1-211ENST00000413186 SLC27A2O14975 620 aa9.87□□□□□ -0.83
SYNE1-211ENST00000413186 C21orf2O43822 256 aa9.87□□□□□ -0.83
SYNE1-211ENST00000413186 PCP11498 1178 aaKnown RBP9.87□□□□□ -0.83
SYNE1-211ENST00000413186 PIBF1Q8WXW3 757 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms