RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 NAA16Q6N069 864 aaPredicted RBP23.68■■□□□ 1.38
USP39-204ENST00000409766 SETDB2Q96T68 719 aa23.68■■□□□ 1.38
USP39-204ENST00000409766 SCAND2PQ9GZW5 306 aaPredicted RBP23.68■■□□□ 1.38
USP39-204ENST00000409766 KIF3AQ9Y496 699 aa23.68■■□□□ 1.38
USP39-204ENST00000409766 PATL2C9JE40 543 aaKnown RBP23.67■■□□□ 1.38
USP39-204ENST00000409766 ZPR1O75312 459 aa23.67■■□□□ 1.38
USP39-204ENST00000409766 UBE4AQ14139 1066 aa23.67■■□□□ 1.38
USP39-204ENST00000409766 TSPY26PQ9H489 355 aa23.67■■□□□ 1.38
USP39-204ENST00000409766 ZSCAN16Q9H4T2 348 aaPredicted RBP23.67■■□□□ 1.38
USP39-204ENST00000409766 TRPC5Q9UL62 973 aaPredicted RBP23.67■■□□□ 1.38
USP39-204ENST00000409766 MINPP1Q9UNW1 487 aa23.67■■□□□ 1.38
USP39-204ENST00000409766 RTCBQ9Y3I0 505 aaKnown RBP23.67■■□□□ 1.38
USP39-204ENST00000409766 MBD4O95243 580 aa23.67■■□□□ 1.38
USP39-204ENST00000409766 TRDNQ13061 729 aa23.67■■□□□ 1.38
USP39-204ENST00000409766 AMIGO3Q86WK7 504 aa23.67■■□□□ 1.38
USP39-204ENST00000409766 ANP32BQ92688 251 aaKnown RBP23.67■■□□□ 1.38
USP39-204ENST00000409766 TPRNQ4KMQ1 711 aa23.66■■□□□ 1.38
USP39-204ENST00000409766 CELF1Q92879 486 aaKnown RBP23.66■■□□□ 1.38
USP39-204ENST00000409766 LETM1O95202 739 aaPredicted RBP23.66■■□□□ 1.38
USP39-204ENST00000409766 EPB41L4AQ9HCS5 686 aaPredicted RBP23.66■■□□□ 1.38
USP39-204ENST00000409766 TFIP11Q9UBB9 837 aaKnown RBP23.66■■□□□ 1.38
USP39-204ENST00000409766 DENND2AQ9ULE3 1009 aa23.66■■□□□ 1.38
USP39-204ENST00000409766 HPS5Q9UPZ3 1129 aa23.66■■□□□ 1.38
USP39-204ENST00000409766 KLF18A0A0U1RQI7 1052 aa23.65■■□□□ 1.38
USP39-204ENST00000409766 WTIPA6NIX2 430 aaPredicted RBP23.65■■□□□ 1.38
USP39-204ENST00000409766 NBPF5PQ86XG9 351 aaPredicted RBP23.65■■□□□ 1.38
USP39-204ENST00000409766 IFNL3Q8IZI9 196 aa23.65■■□□□ 1.38
USP39-204ENST00000409766 ARHGEF1Q92888 912 aaKnown RBP23.65■■□□□ 1.38
USP39-204ENST00000409766 ARMT1Q9H993 441 aa23.65■■□□□ 1.38
USP39-204ENST00000409766 MYH15Q9Y2K3 1946 aa23.65■■□□□ 1.38
USP39-204ENST00000409766 GYG1P46976 350 aa23.64■■□□□ 1.38
USP39-204ENST00000409766 NKX2-3Q8TAU0 364 aa23.64■■□□□ 1.38
USP39-204ENST00000409766 LEO1Q8WVC0 666 aaPredicted RBP23.64■■□□□ 1.38
USP39-204ENST00000409766 NLRP3Q96P20 1036 aa23.64■■□□□ 1.38
USP39-204ENST00000409766 FDPSP14324 419 aaKnown RBP23.64■■□□□ 1.37
USP39-204ENST00000409766 KLHL34Q8N239 644 aa23.64■■□□□ 1.37
USP39-204ENST00000409766 SPATA32Q96LK8 384 aa23.64■■□□□ 1.37
USP39-204ENST00000409766 LRP2BPQ9P2M1 347 aa23.64■■□□□ 1.37
USP39-204ENST00000409766 PNPLA7Q6ZV29 1317 aa23.64■■□□□ 1.37
USP39-204ENST00000409766 CARMIL3Q8ND23 1372 aa23.63■■□□□ 1.37
USP39-204ENST00000409766 CHD4Q14839 1912 aa23.63■■□□□ 1.37
USP39-204ENST00000409766 GSG1L2A8MUP6 293 aa23.63■■□□□ 1.37
USP39-204ENST00000409766 CYB5R4Q7L1T6 521 aa23.63■■□□□ 1.37
USP39-204ENST00000409766 GNL3LQ9NVN8 582 aaKnown RBP23.63■■□□□ 1.37
USP39-204ENST00000409766 IQSEC3Q9UPP2 1182 aaPredicted RBP23.63■■□□□ 1.37
USP39-204ENST00000409766 C4AP0C0L4 1744 aa23.63■■□□□ 1.37
USP39-204ENST00000409766 C4BP0C0L5 1744 aa23.63■■□□□ 1.37
USP39-204ENST00000409766 GOLGA8BA8MQT2 603 aa23.62■■□□□ 1.37
USP39-204ENST00000409766 TPTE2Q6XPS3 522 aa23.62■■□□□ 1.37
USP39-204ENST00000409766 NAPBQ9H115 298 aa23.62■■□□□ 1.37
USP39-204ENST00000409766 DHX16O60231 1041 aaKnown RBP23.62■■□□□ 1.37
USP39-204ENST00000409766 GNAT2P19087 354 aa23.62■■□□□ 1.37
USP39-204ENST00000409766 RPS8P62241 208 aaKnown RBP23.62■■□□□ 1.37
USP39-204ENST00000409766 LCORLQ8N3X6 602 aa23.62■■□□□ 1.37
USP39-204ENST00000409766 ANGEL1Q9UNK9 670 aaKnown RBP23.62■■□□□ 1.37
USP39-204ENST00000409766 COL1A1P02452 1464 aaPredicted RBP23.62■■□□□ 1.37
USP39-204ENST00000409766 CAVIN4Q5BKX8 364 aa23.61■■□□□ 1.37
USP39-204ENST00000409766 SEPT12Q8IYM1 358 aa23.61■■□□□ 1.37
USP39-204ENST00000409766 NEDD4P46934 1319 aa23.61■■□□□ 1.37
USP39-204ENST00000409766 TIAM2Q8IVF5 1701 aa23.61■■□□□ 1.37
USP39-204ENST00000409766 B4E1Z4 1266 aa23.6■■□□□ 1.37
USP39-204ENST00000409766 PPFIA3O75145 1194 aa23.6■■□□□ 1.37
USP39-204ENST00000409766 ADD1P35611 737 aaKnown RBP23.6■■□□□ 1.37
USP39-204ENST00000409766 FAM84BQ96KN1 310 aaPredicted RBP23.6■■□□□ 1.37
USP39-204ENST00000409766 QTRT2Q9H974 415 aaKnown RBP23.6■■□□□ 1.37
USP39-204ENST00000409766 SH2B2O14492 632 aaPredicted RBP23.6■■□□□ 1.37
USP39-204ENST00000409766 PRKAB2O43741 272 aa23.6■■□□□ 1.37
USP39-204ENST00000409766 RNF214Q8ND24 703 aa23.6■■□□□ 1.37
USP39-204ENST00000409766 TRIM44Q96DX7 344 aaPredicted RBP23.6■■□□□ 1.37
USP39-204ENST00000409766 RRAGDQ9NQL2 400 aaPredicted RBP23.6■■□□□ 1.37
USP39-204ENST00000409766 CFAP45Q9UL16 551 aa23.6■■□□□ 1.37
USP39-204ENST00000409766 FOSBP53539 338 aa23.59■■□□□ 1.37
USP39-204ENST00000409766 PDLIM2Q96JY6 352 aa23.59■■□□□ 1.37
USP39-204ENST00000409766 SLC4A4Q9Y6R1 1079 aa23.59■■□□□ 1.37
USP39-204ENST00000409766 TMEM87BQ96K49 555 aa23.59■■□□□ 1.37
USP39-204ENST00000409766 CACNA1SQ13698 1873 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 ADGRA1Q86SQ6 560 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 CCDC24Q8N4L8 307 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 MIGA1Q8NAN2 632 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 IGDCC4Q8TDY8 1250 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 NACAP1Q9BZK3 213 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 INCENPQ9NQS7 918 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 ABCF2Q9UG63 623 aa23.58■■□□□ 1.37
USP39-204ENST00000409766 LIG1P18858 919 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 CYP7A1P22680 504 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 TM4SF1P30408 202 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 RFC4P35249 363 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 CTDSPL2Q05D32 466 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 FBXO33Q7Z6M2 555 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 VPS37DQ86XT2 251 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 FUCA2Q9BTY2 467 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 TACC3Q9Y6A5 838 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 AKNAD1Q5T1N1 836 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 TRAPPC3LQ5T215 181 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 RAB11FIP4Q86YS3 637 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 PGBD1Q96JS3 809 aa23.57■■□□□ 1.36
USP39-204ENST00000409766 GOLGA6L4A6NEF3 574 aa23.56■■□□□ 1.36
USP39-204ENST00000409766 GIMAP6Q6P9H5 292 aa23.56■■□□□ 1.36
USP39-204ENST00000409766 CNNM2Q9H8M5 875 aa23.56■■□□□ 1.36
USP39-204ENST00000409766 CPLX1O14810 134 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms