RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CERKQ8TCT0 537 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 KLF18A0A0U1RQI7 1052 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 H3BQV1 296 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 IFFO2Q5TF58 517 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 RALYLQ86SE5 291 aaKnown RBP17.76■□□□□ 0.43
GPC3-202ENST00000394299 ZNF274Q96GC6 653 aaPredicted RBP17.76■□□□□ 0.43
GPC3-202ENST00000394299 BCORQ6W2J9 1755 aa17.75■□□□□ 0.43
GPC3-202ENST00000394299 B4E1Z4 1266 aa17.75■□□□□ 0.43
GPC3-202ENST00000394299 FDPSP14324 419 aaKnown RBP17.75■□□□□ 0.43
GPC3-202ENST00000394299 IFNL3Q8IZI9 196 aa17.75■□□□□ 0.43
GPC3-202ENST00000394299 NLRP3Q96P20 1036 aa17.75■□□□□ 0.43
GPC3-202ENST00000394299 HPS5Q9UPZ3 1129 aa17.75■□□□□ 0.43
GPC3-202ENST00000394299 GSG1L2A8MUP6 293 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 PATL2C9JE40 543 aaKnown RBP17.74■□□□□ 0.43
GPC3-202ENST00000394299 SMIM22K7EJ46 135 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 RXRAP19793 462 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 RPS8P62241 208 aaKnown RBP17.74■□□□□ 0.43
GPC3-202ENST00000394299 KRT85P78386 507 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 RESTQ13127 1097 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 OTUD7BQ6GQQ9 843 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 FAM84BQ96KN1 310 aaPredicted RBP17.74■□□□□ 0.43
GPC3-202ENST00000394299 TFCP2L1Q9NZI6 479 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 NEDD4P46934 1319 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 ATRNO75882 1429 aa17.74■□□□□ 0.43
GPC3-202ENST00000394299 CEBPZQ03701 1054 aaKnown RBP17.74■□□□□ 0.43
GPC3-202ENST00000394299 LLPHQ9BRT6 129 aaKnown RBP17.74■□□□□ 0.43
GPC3-202ENST00000394299 RFC4P35249 363 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 TPTE2Q6XPS3 522 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 FTOQ9C0B1 505 aaKnown RBP eCLIP17.73■□□□□ 0.43
GPC3-202ENST00000394299 GJB4Q9NTQ9 266 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 TAOK2Q9UL54 1235 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 THSD7AQ9UPZ6 1657 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 NPHP1O15259 732 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 TM4SF1P30408 202 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 EVCP57679 992 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 TRAPPC3LQ5T215 181 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 JAG2Q9Y219 1238 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 SLC4A4Q9Y6R1 1079 aa17.73■□□□□ 0.43
GPC3-202ENST00000394299 SALL1Q9NSC2 1324 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 GOLGA8BA8MQT2 603 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 KDM4AO75164 1064 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 CYP7A1P22680 504 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 TRDNQ13061 729 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 UBE4AQ14139 1066 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 VPS37DQ86XT2 251 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 SYAP1Q96A49 352 aaPredicted RBP17.72■□□□□ 0.43
GPC3-202ENST00000394299 NYXQ9GZU5 481 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 NAPBQ9H115 298 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 RRAGDQ9NQL2 400 aaPredicted RBP17.72■□□□□ 0.43
GPC3-202ENST00000394299 RAI14Q9P0K7 980 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 COL1A1P02452 1464 aaPredicted RBP17.72■□□□□ 0.43
GPC3-202ENST00000394299 GIMAP6Q6P9H5 292 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 TXNRD3Q86VQ6 643 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 FBXL16Q8N461 479 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 SDR42E1Q8WUS8 393 aa17.72■□□□□ 0.43
GPC3-202ENST00000394299 ZNF804BA4D1E1 1349 aa17.71■□□□□ 0.43
GPC3-202ENST00000394299 ARAP2Q8WZ64 1704 aa17.71■□□□□ 0.43
GPC3-202ENST00000394299 ONECUT3O60422 494 aaPredicted RBP17.71■□□□□ 0.43
GPC3-202ENST00000394299 LIG1P18858 919 aa17.71■□□□□ 0.43
GPC3-202ENST00000394299 CCDC144CPQ8IYA2 1237 aa17.71■□□□□ 0.43
GPC3-202ENST00000394299 LEO1Q8WVC0 666 aaPredicted RBP17.71■□□□□ 0.43
GPC3-202ENST00000394299 SPATA32Q96LK8 384 aa17.71■□□□□ 0.43
GPC3-202ENST00000394299 QTRT2Q9H974 415 aaKnown RBP17.71■□□□□ 0.43
GPC3-202ENST00000394299 NFIXQ14938 502 aa17.71■□□□□ 0.42
GPC3-202ENST00000394299 CCDC183Q5T5S1 534 aa17.71■□□□□ 0.42
GPC3-202ENST00000394299 ZNF831Q5JPB2 1677 aa17.7■□□□□ 0.42
GPC3-202ENST00000394299 LAMB2P55268 1798 aa17.7■□□□□ 0.42
GPC3-202ENST00000394299 ADD1P35611 737 aaKnown RBP17.7■□□□□ 0.42
GPC3-202ENST00000394299 HMGN5P82970 282 aaKnown RBP17.7■□□□□ 0.42
GPC3-202ENST00000394299 CAVIN4Q5BKX8 364 aa17.7■□□□□ 0.42
GPC3-202ENST00000394299 ZNF384Q8TF68 577 aa17.7■□□□□ 0.42
GPC3-202ENST00000394299 MYL10Q9BUA6 226 aa17.7■□□□□ 0.42
GPC3-202ENST00000394299 TSPY26PQ9H489 355 aa17.7■□□□□ 0.42
GPC3-202ENST00000394299 ZSWIM5Q9P217 1185 aa17.7■□□□□ 0.42
GPC3-202ENST00000394299 TRPC5Q9UL62 973 aaPredicted RBP17.7■□□□□ 0.42
GPC3-202ENST00000394299 PDIA4P13667 645 aaKnown RBP17.69■□□□□ 0.42
GPC3-202ENST00000394299 DYNLL1P63167 89 aaKnown RBP17.69■□□□□ 0.42
GPC3-202ENST00000394299 ALX1Q15699 326 aa17.69■□□□□ 0.42
GPC3-202ENST00000394299 CSPP1Q1MSJ5 1256 aa17.69■□□□□ 0.42
GPC3-202ENST00000394299 RRP12Q5JTH9 1297 aaKnown RBP17.69■□□□□ 0.42
GPC3-202ENST00000394299 PGBD1Q96JS3 809 aa17.69■□□□□ 0.42
GPC3-202ENST00000394299 ZKSCAN3Q9BRR0 538 aa17.69■□□□□ 0.42
GPC3-202ENST00000394299 TDO2P48775 406 aa17.69■□□□□ 0.42
GPC3-202ENST00000394299 CARMIL3Q8ND23 1372 aa17.69■□□□□ 0.42
GPC3-202ENST00000394299 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.68■□□□□ 0.42
GPC3-202ENST00000394299 SH2B2O14492 632 aaPredicted RBP17.68■□□□□ 0.42
GPC3-202ENST00000394299 CAMK4Q16566 473 aa17.68■□□□□ 0.42
GPC3-202ENST00000394299 ILDR1Q86SU0 546 aaPredicted RBP17.68■□□□□ 0.42
GPC3-202ENST00000394299 IGDCC4Q8TDY8 1250 aa17.68■□□□□ 0.42
GPC3-202ENST00000394299 TOMM22Q9NS69 142 aa17.68■□□□□ 0.42
GPC3-202ENST00000394299 GNL3LQ9NVN8 582 aaKnown RBP17.68■□□□□ 0.42
GPC3-202ENST00000394299 ANGEL1Q9UNK9 670 aaKnown RBP17.68■□□□□ 0.42
GPC3-202ENST00000394299 NHSQ6T4R5 1651 aa17.68■□□□□ 0.42
GPC3-202ENST00000394299 FBXO33Q7Z6M2 555 aa17.68■□□□□ 0.42
GPC3-202ENST00000394299 AIFM3Q96NN9 605 aa17.68■□□□□ 0.42
GPC3-202ENST00000394299 SCN7AQ01118 1682 aa17.67■□□□□ 0.42
GPC3-202ENST00000394299 CDC27P30260 824 aa17.67■□□□□ 0.42
GPC3-202ENST00000394299 CHAF1AQ13111 956 aaPredicted RBP17.67■□□□□ 0.42
GPC3-202ENST00000394299 BCL11BQ9C0K0 894 aaPredicted RBP17.67■□□□□ 0.42
GPC3-202ENST00000394299 SCAND2PQ9GZW5 306 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms