RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 COL9A3Q14050 684 aaPredicted RBP10.27□□□□□ -0.77
TDP1-203ENST00000393454 ANKRD1Q15327 319 aa10.27□□□□□ -0.77
TDP1-203ENST00000393454 NFKBIBQ15653 356 aa10.27□□□□□ -0.77
TDP1-203ENST00000393454 SPTY2D1Q68D10 685 aaPredicted RBP10.27□□□□□ -0.77
TDP1-203ENST00000393454 OLFM4Q6UX06 510 aa10.27□□□□□ -0.77
TDP1-203ENST00000393454 C15orf52Q6ZUT6 534 aaKnown RBP10.27□□□□□ -0.77
TDP1-203ENST00000393454 STOX1Q6ZVD7 989 aa10.27□□□□□ -0.77
TDP1-203ENST00000393454 LCORLQ8N3X6 602 aa10.27□□□□□ -0.77
TDP1-203ENST00000393454 MPNDQ8N594 471 aa10.27□□□□□ -0.77
TDP1-203ENST00000393454 CWC22Q9HCG8 908 aaKnown RBP10.27□□□□□ -0.77
TDP1-203ENST00000393454 CACNA1SQ13698 1873 aa10.27□□□□□ -0.77
TDP1-203ENST00000393454 COL11A2P13942 1736 aaPredicted RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 PATL2C9JE40 543 aaKnown RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 HMGB1P09429 215 aaKnown RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 CHRNA5P30532 468 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 CUL4AQ13619 759 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 CCDC125Q86Z20 511 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 TDRD7Q8NHU6 1098 aaKnown RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 WDR66Q8TBY9 1149 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 ZSCAN31Q96LW9 406 aaPredicted RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 SLC4A4Q9Y6R1 1079 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 PRKAB2O43741 272 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 GNAT2P19087 354 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 PRDX5P30044 214 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 MECOMQ03112 1051 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 DPP8Q6V1X1 898 aaPredicted RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 Q6ZUG5 572 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 ADGRA1Q86SQ6 560 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 DZIP1Q86YF9 867 aaKnown RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 NACAP1Q9BZK3 213 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 NAPBQ9H115 298 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 CD209Q9NNX6 404 aa10.26□□□□□ -0.77
TDP1-203ENST00000393454 ZNF219Q9P2Y4 722 aaPredicted RBP10.26□□□□□ -0.77
TDP1-203ENST00000393454 LAMA4Q16363 1823 aa10.25□□□□□ -0.77
TDP1-203ENST00000393454 LDHBP07195 334 aaKnown RBP10.25□□□□□ -0.77
TDP1-203ENST00000393454 TDO2P48775 406 aa10.25□□□□□ -0.77
TDP1-203ENST00000393454 DYNLL1P63167 89 aaKnown RBP10.25□□□□□ -0.77
TDP1-203ENST00000393454 STYK1Q6J9G0 422 aa10.25□□□□□ -0.77
TDP1-203ENST00000393454 DHX32Q7L7V1 743 aaKnown RBP10.25□□□□□ -0.77
TDP1-203ENST00000393454 IFNL3Q8IZI9 196 aa10.25□□□□□ -0.77
TDP1-203ENST00000393454 NSUN4Q96CB9 384 aaKnown RBP10.25□□□□□ -0.77
TDP1-203ENST00000393454 LRRC2Q9BYS8 371 aa10.25□□□□□ -0.77
TDP1-203ENST00000393454 ZC3H12CQ9C0D7 883 aaKnown RBP10.25□□□□□ -0.77
TDP1-203ENST00000393454 ALDH8A1Q9H2A2 487 aaPredicted RBP10.25□□□□□ -0.77
TDP1-203ENST00000393454 LRRC37AA6NMS7 1700 aa10.25□□□□□ -0.77
TDP1-203ENST00000393454 CCDC88AQ3V6T2 1871 aa10.25□□□□□ -0.77
TDP1-203ENST00000393454 G3V3G9 751 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 LARGE1O95461 756 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 DCAF8Q5TAQ9 597 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 CCDC83Q8IWF9 413 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 INTS4Q96HW7 963 aaKnown RBP10.24□□□□□ -0.77
TDP1-203ENST00000393454 SH2B1Q9NRF2 756 aaPredicted RBP10.24□□□□□ -0.77
TDP1-203ENST00000393454 TPCN1Q9ULQ1 816 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 GSG1L2A8MUP6 293 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 IL1R1P14778 569 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 NUCB2P80303 420 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 TRDNQ13061 729 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 TOB2Q14106 344 aaPredicted RBP10.24□□□□□ -0.77
TDP1-203ENST00000393454 ALX1Q15699 326 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 ME3Q16798 604 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 CHST3Q7LGC8 479 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 RALYLQ86SE5 291 aaKnown RBP10.24□□□□□ -0.77
TDP1-203ENST00000393454 SLC16A10Q8TF71 515 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 FBXW7Q969H0 707 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 CNKSR1Q969H4 720 aa10.24□□□□□ -0.77
TDP1-203ENST00000393454 STK3Q13188 491 aa10.23□□□□□ -0.77
TDP1-203ENST00000393454 RAB3GAP1Q15042 981 aa10.23□□□□□ -0.77
TDP1-203ENST00000393454 NECAB1Q8N987 351 aa10.23□□□□□ -0.77
TDP1-203ENST00000393454 NCOA7Q8NI08 942 aa10.23□□□□□ -0.77
TDP1-203ENST00000393454 ZNF384Q8TF68 577 aa10.23□□□□□ -0.77
TDP1-203ENST00000393454 SDR42E1Q8WUS8 393 aa10.23□□□□□ -0.77
TDP1-203ENST00000393454 RIOK1Q9BRS2 568 aaKnown RBP10.23□□□□□ -0.77
TDP1-203ENST00000393454 EPB41L4AQ9HCS5 686 aaPredicted RBP10.23□□□□□ -0.77
TDP1-203ENST00000393454 AATFQ9NY61 560 aaKnown RBP eCLIP10.23□□□□□ -0.77
TDP1-203ENST00000393454 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.23□□□□□ -0.77
TDP1-203ENST00000393454 SALL1Q9NSC2 1324 aa10.23□□□□□ -0.77
TDP1-203ENST00000393454 ZBTB22O15209 634 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 GSTO1P78417 241 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 EXOSC10Q01780 885 aaKnown RBP10.22□□□□□ -0.77
TDP1-203ENST00000393454 DOK7Q18PE1 504 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 TNPO1Q92973 898 aaKnown RBP10.22□□□□□ -0.77
TDP1-203ENST00000393454 BRF1Q92994 677 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 EYA3Q99504 573 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 NAP1L2Q9ULW6 460 aaPredicted RBP10.22□□□□□ -0.77
TDP1-203ENST00000393454 SMC3Q9UQE7 1217 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 LTBP1Q14766 1721 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 MINDY4BA8MYZ0 360 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 SOCS7O14512 581 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 ZBTB7AO95365 584 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 MCM5P33992 734 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 CTDSPL2Q05D32 466 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 TBC1D10CQ8IV04 446 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 STK11IPQ8N1F8 1099 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 NOL10Q9BSC4 688 aaKnown RBP10.22□□□□□ -0.77
TDP1-203ENST00000393454 CRNKL1Q9BZJ0 848 aaKnown RBP10.22□□□□□ -0.77
TDP1-203ENST00000393454 COA1Q9GZY4 146 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 NBPF3Q9H094 633 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 ZMYM6O95789 1325 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 SLX4Q8IY92 1834 aa10.22□□□□□ -0.77
TDP1-203ENST00000393454 MAST2Q6P0Q8 1798 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms