RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SHISA5Q8N114 240 aa4.36□□□□□ -1.71
VPS13A-206ENST00000376646 EPS8L3Q8TE67 593 aaKnown RBP4.36□□□□□ -1.71
VPS13A-206ENST00000376646 NRSN2Q9GZP1 204 aa4.36□□□□□ -1.71
VPS13A-206ENST00000376646 EHD4Q9H223 541 aa4.36□□□□□ -1.71
VPS13A-206ENST00000376646 BIN2Q9UBW5 565 aaPredicted RBP4.36□□□□□ -1.71
VPS13A-206ENST00000376646 RNF112Q9ULX5 631 aa4.36□□□□□ -1.71
VPS13A-206ENST00000376646 CPNE3O75131 537 aaKnown RBP4.35□□□□□ -1.71
VPS13A-206ENST00000376646 IGLV1-40P01703 118 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 JAG1P78504 1218 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 NFIAQ12857 509 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 NUTM2GQ5VZR2 741 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.35□□□□□ -1.71
VPS13A-206ENST00000376646 CCDC74AQ96AQ1 378 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 TMPRSS13Q9BYE2 586 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 CLEC4MQ9H2X3 399 aaPredicted RBP4.35□□□□□ -1.71
VPS13A-206ENST00000376646 MAOBP27338 520 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 PDE3BQ13370 1112 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 ANKRD34AQ69YU3 496 aa4.35□□□□□ -1.71
VPS13A-206ENST00000376646 TRIM56Q9BRZ2 755 aaKnown RBP4.35□□□□□ -1.71
VPS13A-206ENST00000376646 GAS2O43903 313 aaKnown RBP4.34□□□□□ -1.71
VPS13A-206ENST00000376646 UVSSAQ2YD98 709 aa4.34□□□□□ -1.71
VPS13A-206ENST00000376646 KIAA0319Q5VV43 1072 aa4.34□□□□□ -1.71
VPS13A-206ENST00000376646 TMC7Q7Z402 723 aa4.34□□□□□ -1.71
VPS13A-206ENST00000376646 ZDHHC13Q8IUH4 622 aa4.34□□□□□ -1.71
VPS13A-206ENST00000376646 MFSD14AQ96MC6 490 aa4.34□□□□□ -1.71
VPS13A-206ENST00000376646 ABCB6Q9NP58 842 aa4.34□□□□□ -1.71
VPS13A-206ENST00000376646 GADD45BO75293 160 aaPredicted RBP4.34□□□□□ -1.72
VPS13A-206ENST00000376646 TIAF1O95411 115 aa4.34□□□□□ -1.72
VPS13A-206ENST00000376646 RXRBP28702 533 aa4.34□□□□□ -1.72
VPS13A-206ENST00000376646 CDPF1Q6NVV7 123 aa4.34□□□□□ -1.72
VPS13A-206ENST00000376646 FBXL6Q8N531 539 aa4.34□□□□□ -1.72
VPS13A-206ENST00000376646 FBLIM1Q8WUP2 373 aa4.34□□□□□ -1.72
VPS13A-206ENST00000376646 ZNF576Q9H609 170 aa4.34□□□□□ -1.72
VPS13A-206ENST00000376646 SOX17Q9H6I2 414 aaPredicted RBP4.34□□□□□ -1.72
VPS13A-206ENST00000376646 PCMTD2Q9NV79 361 aa4.34□□□□□ -1.72
VPS13A-206ENST00000376646 MEGF11A6BM72 1044 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 MAP4P27816 1152 aaKnown RBP4.33□□□□□ -1.72
VPS13A-206ENST00000376646 FAAP100Q0VG06 881 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 GRM2Q14416 872 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 RNF43Q68DV7 783 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 ERICH6Q7L0X2 663 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 SHKBP1Q8TBC3 707 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 CSRNP1Q96S65 589 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 FAM83CQ9BQN1 747 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 ZC3H12CQ9C0D7 883 aaKnown RBP4.33□□□□□ -1.72
VPS13A-206ENST00000376646 ADAMTS4O75173 837 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 CD97P48960 835 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 EXOSC6Q5RKV6 272 aaKnown RBP4.33□□□□□ -1.72
VPS13A-206ENST00000376646 CLEC10AQ8IUN9 316 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 C2CD4AQ8NCU7 369 aaPredicted RBP4.33□□□□□ -1.72
VPS13A-206ENST00000376646 SMG8Q8ND04 991 aaKnown RBP4.33□□□□□ -1.72
VPS13A-206ENST00000376646 GLIS3Q8NEA6 775 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 SETDB2Q96T68 719 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 RBCK1Q9BYM8 510 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 CYP4F12Q9HCS2 524 aa4.33□□□□□ -1.72
VPS13A-206ENST00000376646 PRR19A6NJB7 356 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 WDR64B1ANS9 1081 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 B3GALT4O96024 378 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 POU4F3Q15319 338 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 AKAP4Q5JQC9 854 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 DBNDD2Q9BQY9 259 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 SUGCTQ9HAC7 445 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 BRD1O95696 1058 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 ADH5P11766 374 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 ITPKAP23677 461 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 MAPK1P28482 360 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 HOXA10P31260 410 aaPredicted RBP4.32□□□□□ -1.72
VPS13A-206ENST00000376646 SOX4Q06945 474 aaPredicted RBP4.32□□□□□ -1.72
VPS13A-206ENST00000376646 NFKBIBQ15653 356 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 CITED4Q96RK1 184 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 LGR6Q9HBX8 967 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 GNEQ9Y223 722 aaKnown RBP4.32□□□□□ -1.72
VPS13A-206ENST00000376646 ACTL7BQ9Y614 415 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 IVNS1ABPQ9Y6Y0 642 aa4.32□□□□□ -1.72
VPS13A-206ENST00000376646 TMEM238LA0A1B0GVL6 79 aa4.31□□□□□ -1.72
VPS13A-206ENST00000376646 NEFLP07196 543 aa4.31□□□□□ -1.72
VPS13A-206ENST00000376646 RAB6AP20340 208 aa4.31□□□□□ -1.72
VPS13A-206ENST00000376646 ADMP35318 185 aa4.31□□□□□ -1.72
VPS13A-206ENST00000376646 USP11P51784 963 aa4.31□□□□□ -1.72
VPS13A-206ENST00000376646 FCGRTP55899 365 aa4.31□□□□□ -1.72
VPS13A-206ENST00000376646 WDR89Q96FK6 387 aaPredicted RBP4.31□□□□□ -1.72
VPS13A-206ENST00000376646 DCTN4Q9UJW0 460 aa4.31□□□□□ -1.72
VPS13A-206ENST00000376646 PNMA6FA0A0J9YX94 578 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 GSC2O15499 205 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 F13BP05160 661 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 DYMQ7RTS9 669 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 ALKBH8Q96BT7 664 aaKnown RBP4.3□□□□□ -1.72
VPS13A-206ENST00000376646 DMRTB1Q96MA1 342 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 CORO1BQ9BR76 489 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 DNAJC25Q9H1X3 360 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 FAM105AQ9NUU6 356 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 AP4E1Q9UPM8 1137 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 FAM95CA0A1B0GW59 222 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 CYP11A1P05108 521 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 NFICP08651 508 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 PDE4CQ08493 712 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 PDE3AQ14432 1141 aa4.3□□□□□ -1.72
VPS13A-206ENST00000376646 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS13A-206ENST00000376646 PRPF40BQ6NWY9 871 aaKnown RBP4.3□□□□□ -1.72
VPS13A-206ENST00000376646 NXPE4Q6UWF7 544 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms