RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CWC25Q9NXE8 425 aaPredicted RBP18.99■□□□□ 0.63
SDC4-201ENST00000372733 H2AFXP16104 143 aaPredicted RBP18.98■□□□□ 0.63
SDC4-201ENST00000372733 ADORA1P30542 326 aa18.98■□□□□ 0.63
SDC4-201ENST00000372733 IMMTQ16891 758 aaKnown RBP18.98■□□□□ 0.63
SDC4-201ENST00000372733 DCAF5Q96JK2 942 aa18.98■□□□□ 0.63
SDC4-201ENST00000372733 AIFM3Q96NN9 605 aa18.98■□□□□ 0.63
SDC4-201ENST00000372733 HSD3B7Q9H2F3 369 aa18.98■□□□□ 0.63
SDC4-201ENST00000372733 PTPN21Q16825 1174 aa18.98■□□□□ 0.63
SDC4-201ENST00000372733 HOMER1Q86YM7 354 aa18.98■□□□□ 0.63
SDC4-201ENST00000372733 DPF2Q92785 391 aa18.98■□□□□ 0.63
SDC4-201ENST00000372733 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.98■□□□□ 0.63
SDC4-201ENST00000372733 FGAP02671 866 aa18.97■□□□□ 0.63
SDC4-201ENST00000372733 CSB-PGBD3P0DP91 1061 aa18.97■□□□□ 0.63
SDC4-201ENST00000372733 KCNJ6P48051 423 aa18.97■□□□□ 0.63
SDC4-201ENST00000372733 TJP1Q07157 1748 aa18.97■□□□□ 0.63
SDC4-201ENST00000372733 DHX16O60231 1041 aaKnown RBP18.97■□□□□ 0.63
SDC4-201ENST00000372733 CMA1P23946 247 aa18.97■□□□□ 0.63
SDC4-201ENST00000372733 CABP4P57796 275 aa18.97■□□□□ 0.63
SDC4-201ENST00000372733 ZBTB3Q9H5J0 574 aa18.97■□□□□ 0.63
SDC4-201ENST00000372733 NRDCO43847 1150 aa18.96■□□□□ 0.63
SDC4-201ENST00000372733 CLCN6P51797 869 aa18.96■□□□□ 0.63
SDC4-201ENST00000372733 GOLGA8FQ08AF8 430 aa18.96■□□□□ 0.63
SDC4-201ENST00000372733 GOLGA8DPQ0D2H9 430 aa18.96■□□□□ 0.63
SDC4-201ENST00000372733 DNAI1Q9UI46 699 aa18.96■□□□□ 0.63
SDC4-201ENST00000372733 SCARF1Q14162 830 aa18.96■□□□□ 0.63
SDC4-201ENST00000372733 ARHGAP29Q52LW3 1261 aa18.96■□□□□ 0.63
SDC4-201ENST00000372733 RALYLQ86SE5 291 aaKnown RBP18.95■□□□□ 0.62
SDC4-201ENST00000372733 DENND2AQ9ULE3 1009 aa18.95■□□□□ 0.62
SDC4-201ENST00000372733 IKBKBO14920 756 aa18.95■□□□□ 0.62
SDC4-201ENST00000372733 FANCGO15287 622 aa18.95■□□□□ 0.62
SDC4-201ENST00000372733 ETF1P62495 437 aaKnown RBP18.95■□□□□ 0.62
SDC4-201ENST00000372733 TTC39AQ5SRH9 613 aa18.95■□□□□ 0.62
SDC4-201ENST00000372733 PI16Q6UXB8 463 aa18.95■□□□□ 0.62
SDC4-201ENST00000372733 PUS7LQ9H0K6 701 aaKnown RBP18.95■□□□□ 0.62
SDC4-201ENST00000372733 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.95■□□□□ 0.62
SDC4-201ENST00000372733 SPEF2Q9C093 1822 aa18.95■□□□□ 0.62
SDC4-201ENST00000372733 SYKP43405 635 aa18.94■□□□□ 0.62
SDC4-201ENST00000372733 TICAM2Q86XR7 235 aa18.94■□□□□ 0.62
SDC4-201ENST00000372733 LAMB4A4D0S4 1761 aa18.94■□□□□ 0.62
SDC4-201ENST00000372733 PNOCQ13519 176 aa18.94■□□□□ 0.62
SDC4-201ENST00000372733 NCOA7Q8NI08 942 aa18.94■□□□□ 0.62
SDC4-201ENST00000372733 CEP126Q9P2H0 1117 aa18.94■□□□□ 0.62
SDC4-201ENST00000372733 TMEM232C9JQI7 657 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 RXRAP19793 462 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 SLC39A14Q15043 492 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 NKX2-3Q8TAU0 364 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 FHOD1Q9Y613 1164 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 SERPINC1P01008 464 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 UBASH3AP57075 661 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 CHRNA2Q15822 529 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 CFAP100Q494V2 611 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 SHC4Q6S5L8 630 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 VPS37DQ86XT2 251 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 CCDC85AQ96PX6 553 aaPredicted RBP18.93■□□□□ 0.62
SDC4-201ENST00000372733 TUBE1Q9UJT0 475 aa18.93■□□□□ 0.62
SDC4-201ENST00000372733 PHLPP2Q6ZVD8 1323 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 ERICH4A6NGS2 130 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 CIAO1O76071 339 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 A1BGP04217 495 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 ZAP70P43403 619 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 MYL5Q02045 173 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.92■□□□□ 0.62
SDC4-201ENST00000372733 XAGE2Q96GT9 111 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 ALG1Q9BT22 464 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 C4AP0C0L4 1744 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 C4BP0C0L5 1744 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 BMS1Q14692 1282 aaKnown RBP18.92■□□□□ 0.62
SDC4-201ENST00000372733 CCDC158Q5M9N0 1113 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 TRIM65Q6PJ69 517 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 CPDO75976 1380 aa18.92■□□□□ 0.62
SDC4-201ENST00000372733 DDX60Q8IY21 1712 aaKnown RBP18.92■□□□□ 0.62
SDC4-201ENST00000372733 GPAA1O43292 621 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 APPBP2Q92624 585 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 CLIC6Q96NY7 704 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 HPSEQ9Y251 543 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 NUP188Q5SRE5 1749 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 TMEM94Q12767 1356 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 ZNF213O14771 459 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 PNMA6AP0CW24 399 aaPredicted RBP18.91■□□□□ 0.62
SDC4-201ENST00000372733 DHX8Q14562 1220 aaKnown RBP18.91■□□□□ 0.62
SDC4-201ENST00000372733 DDX17Q92841 729 aaKnown RBP18.91■□□□□ 0.62
SDC4-201ENST00000372733 UTP14AQ9BVJ6 771 aaKnown RBP18.91■□□□□ 0.62
SDC4-201ENST00000372733 NBPF3Q9H094 633 aa18.91■□□□□ 0.62
SDC4-201ENST00000372733 ZFYP08048 801 aaPredicted RBP18.9■□□□□ 0.62
SDC4-201ENST00000372733 LRRFIP1Q32MZ4 808 aaKnown RBP18.9■□□□□ 0.62
SDC4-201ENST00000372733 CABLES1Q8TDN4 633 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 PHKBQ93100 1093 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 TIGD1Q96MW7 591 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 URI1O94763 535 aaPredicted RBP18.9■□□□□ 0.62
SDC4-201ENST00000372733 HSP90AA4PQ58FG1 418 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 TAF3Q5VWG9 929 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 KRT40Q6A162 431 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 VSTM4Q8IW00 320 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 REXO1L1PQ8IX06 675 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 ZMYM6O95789 1325 aa18.9■□□□□ 0.62
SDC4-201ENST00000372733 PTPAQ15257 358 aa18.89■□□□□ 0.62
SDC4-201ENST00000372733 METTL16Q86W50 562 aaKnown RBP18.89■□□□□ 0.62
SDC4-201ENST00000372733 TBC1D10CQ8IV04 446 aa18.89■□□□□ 0.62
SDC4-201ENST00000372733 CCDC191Q8NCU4 936 aa18.89■□□□□ 0.62
SDC4-201ENST00000372733 MNS1Q8NEH6 495 aa18.89■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms