RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 ICMTO60725 284 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 GJA8P48165 433 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 BRDTQ58F21 947 aaPredicted RBP4.81□□□□□ -1.64
MCF2-203ENST00000370576 ODR4Q5SWX8 454 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 NUTM2DQ5VT03 806 aaPredicted RBP4.81□□□□□ -1.64
MCF2-203ENST00000370576 ANKRD13BQ86YJ7 626 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 PGBD3Q8N328 593 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 GGNBP2Q9H3C7 697 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 HDAC5Q9UQL6 1122 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 PTPRCP08575 1304 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 ERBB4Q15303 1308 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 WDR17Q8IZU2 1322 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 USP42Q9H9J4 1324 aaKnown RBP4.8□□□□□ -1.64
MCF2-203ENST00000370576 GREB1LQ9C091 1923 aaPredicted RBP4.8□□□□□ -1.64
MCF2-203ENST00000370576 MYH13Q9UKX3 1938 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 FAM196BA6NMK8 535 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 LMOD3Q0VAK6 560 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 PTK7Q13308 1070 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 MLECQ14165 292 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 RASA3Q14644 834 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 GJC2Q5T442 439 aaPredicted RBP4.8□□□□□ -1.64
MCF2-203ENST00000370576 PRPF38BQ5VTL8 546 aaKnown RBP4.8□□□□□ -1.64
MCF2-203ENST00000370576 GOLGA1Q92805 767 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 TMEM51Q9NW97 253 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 RCAN3Q9UKA8 241 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 LOC285556D6RIA3 1793 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 PDE6BP35913 854 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 GJA5P36382 358 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 MASP1P48740 699 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 SEC13P55735 322 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 CALD1Q05682 793 aaKnown RBP4.8□□□□□ -1.64
MCF2-203ENST00000370576 ZSCAN30Q86W11 494 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 NELL1Q92832 810 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 CDCA7LQ96GN5 454 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 CHD4Q14839 1912 aa4.8□□□□□ -1.64
MCF2-203ENST00000370576 COL11A2P13942 1736 aaPredicted RBP4.8□□□□□ -1.64
MCF2-203ENST00000370576 TYRP1P17643 537 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 NBPF6Q5VWK0 638 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 ZNF710Q8N1W2 664 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 PMFBP1Q8TBY8 1022 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 FAM212AQ96EL1 285 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 NBPF4Q96M43 638 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 HMX1Q9NP08 348 aaPredicted RBP4.79□□□□□ -1.64
MCF2-203ENST00000370576 MSRB2Q9Y3D2 182 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 BAIAP3O94812 1187 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 VAC14Q08AM6 782 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 DACT2Q5SW24 774 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 LRRC27Q9C0I9 530 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 PTPRHQ9HD43 1115 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 PRMT3O60678 531 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 HNRNPUQ00839 825 aaKnown RBP eCLIP4.79□□□□□ -1.64
MCF2-203ENST00000370576 HLTFQ14527 1009 aaKnown RBP eCLIP4.79□□□□□ -1.64
MCF2-203ENST00000370576 AKAP4Q5JQC9 854 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 TBC1D20Q96BZ9 403 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 STK26Q9P289 416 aa4.79□□□□□ -1.64
MCF2-203ENST00000370576 DIS3Q9Y2L1 958 aaKnown RBP4.79□□□□□ -1.64
MCF2-203ENST00000370576 APAF1O14727 1248 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 KLF4O43474 513 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 GCP02774 474 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 MTX1Q13505 466 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 AMOTQ4VCS5 1084 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 NFATC2IPQ8NCF5 419 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 PPM1EQ8WY54 764 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 FAM167BQ9BTA0 163 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 ZBTB40Q9NUA8 1239 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 POLG2Q9UHN1 485 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 DCTN4Q9UJW0 460 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 ODF2LQ9ULJ1 636 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 MRPS23Q9Y3D9 190 aaKnown RBP4.78□□□□□ -1.64
MCF2-203ENST00000370576 CTSHP09668 335 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 RAPGEF1Q13905 1077 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 CRTC2Q53ET0 693 aaPredicted RBP4.78□□□□□ -1.64
MCF2-203ENST00000370576 FAM83BQ5T0W9 1011 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 SPICE1Q8N0Z3 855 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 MPNDQ8N594 471 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 PRPF38AQ8NAV1 312 aaKnown RBP4.78□□□□□ -1.64
MCF2-203ENST00000370576 GPHNQ9NQX3 736 aaPredicted RBP4.78□□□□□ -1.64
MCF2-203ENST00000370576 MYT1LQ9UL68 1186 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 AXIN2Q9Y2T1 843 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 ZNF335Q9H4Z2 1342 aaPredicted RBP4.78□□□□□ -1.64
MCF2-203ENST00000370576 TCEA3O75764 348 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 GNAI1P63096 354 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 KRT72Q14CN4 511 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 ORAI2Q96SN7 254 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 CAPN10Q9HC96 672 aa4.78□□□□□ -1.64
MCF2-203ENST00000370576 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.78□□□□□ -1.64
MCF2-203ENST00000370576 PEX19P40855 299 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 FOXK1P85037 733 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 MCL1Q07820 350 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 MTHFSDQ2M296 383 aaKnown RBP4.77□□□□□ -1.65
MCF2-203ENST00000370576 KRT28Q7Z3Y7 464 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 GAS2L2Q8NHY3 880 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 MBIPQ9NS73 344 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 TCEAL9Q9UHQ7 104 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 ASAP1Q9ULH1 1129 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 ADCY9O60503 1353 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 TREHO43280 583 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 CAND2O75155 1236 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 NLRP6P59044 892 aa4.77□□□□□ -1.65
MCF2-203ENST00000370576 QPCTQ16769 361 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms