RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 SAMD15Q9P1V8 674 aa10.06□□□□□ -0.8
SYNE1-209ENST00000367257 RPL13P26373 211 aaKnown RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 NUTM2AQ8IVF1 878 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC26Q8TAB7 109 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 NUP58Q9BVL2 599 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 IMPG2Q9BZV3 1241 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 TSPY2A6NKD2 308 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 PDE1AP54750 535 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 ANO6Q4KMQ2 910 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 ALG1Q9BT22 464 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 FAM184BQ9ULE4 1060 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 POLR1AO95602 1720 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 SPTLC2O15270 562 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 SYT1P21579 422 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 HOXA7P31268 230 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 MAP3K9P80192 1104 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 LACTBP83111 547 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 RBM26Q5T8P6 1007 aaKnown RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 TCERG1LQ5VWI1 586 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 SPATS2Q86XZ4 545 aaKnown RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 RPGRQ92834 1020 aaKnown RBP10.05□□□□□ -0.8
SYNE1-209ENST00000367257 ZBTB9Q96C00 473 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 CNGA1P29973 690 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 SATB1Q01826 763 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 DNAJC5Q9H3Z4 198 aa10.05□□□□□ -0.8
SYNE1-209ENST00000367257 IDEP14735 1019 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 GNA11P29992 359 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 FCHSD1Q86WN1 690 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 LMNTD2Q8IXW0 634 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 FAM76AQ8TAV0 307 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 NCAPGQ9BPX3 1015 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 SLC26A6Q9BXS9 759 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 ELP1O95163 1332 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 SMARCA5O60264 1052 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 TYRO3Q06418 890 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 WHAMMP3Q1A5X7 153 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 MCM10Q7L590 875 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 GPR161Q8N6U8 529 aaKnown RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC42Q96M95 316 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 CAMSAP1Q5T5Y3 1602 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 KLF18A0A0U1RQI7 1052 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 HCLS1P14317 486 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 IRX5P78411 483 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 ZKSCAN8Q15776 578 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 CPLX3Q8WVH0 158 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 UTP14AQ9BVJ6 771 aaKnown RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 DNAI1Q9UI46 699 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 CD109Q6YHK3 1445 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 MYCNP04198 464 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 NEK11Q8NG66 645 aa10.04□□□□□ -0.8
SYNE1-209ENST00000367257 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 FEZ2Q9UHY8 353 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-209ENST00000367257 HOXB7P09629 217 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 ARHGAP25P42331 645 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 SNX16P57768 344 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 MAP7Q14244 749 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 SH2D4BQ5SQS7 431 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC186Q7Z3E2 898 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 IQUBQ8NA54 791 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 CCDC8Q9H0W5 538 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-209ENST00000367257 MBIPQ9NS73 344 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 MAP3K2Q9Y2U5 619 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 WDR78Q5VTH9 848 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 ARHGAP24Q8N264 748 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 GOLGA5Q8TBA6 731 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 RAB3IL1Q8TBN0 382 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 MRFAP1L1Q96HT8 127 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 FAM114A2Q9NRY5 505 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 HELLSQ9NRZ9 838 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 KCNG1Q9UIX4 513 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 TRAPPC8Q9Y2L5 1435 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 MYO5BQ9ULV0 1848 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 SDSP20132 328 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 PLCD1P51178 756 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 PRPF4BQ13523 1007 aaKnown RBP10.03□□□□□ -0.8
SYNE1-209ENST00000367257 PPP2R5EQ16537 467 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 KRT79Q5XKE5 535 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 MCTP2Q6DN12 878 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 LDHAL6AQ6ZMR3 332 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 HS2ST1Q7LGA3 356 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 USP48Q86UV5 1035 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 DCTPP1Q9H773 170 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 ANKIB1Q9P2G1 1089 aa10.03□□□□□ -0.8
SYNE1-209ENST00000367257 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.03□□□□□ -0.8
SYNE1-209ENST00000367257 ATP2C2O75185 946 aa10.02□□□□□ -0.8
SYNE1-209ENST00000367257 ERCC3P19447 782 aa10.02□□□□□ -0.8
SYNE1-209ENST00000367257 PEX19P40855 299 aa10.02□□□□□ -0.8
SYNE1-209ENST00000367257 ZMAT2Q96NC0 199 aaKnown RBP10.02□□□□□ -0.8
SYNE1-209ENST00000367257 KRT2P35908 639 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 MYL5Q02045 173 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 CALCOCO2Q13137 446 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 IFIT1BQ5T764 474 aaKnown RBP10.02□□□□□ -0.81
SYNE1-209ENST00000367257 DDX23Q9BUQ8 820 aaKnown RBP10.02□□□□□ -0.81
SYNE1-209ENST00000367257 RBM8AQ9Y5S9 174 aaKnown RBP10.02□□□□□ -0.81
SYNE1-209ENST00000367257 BUB1BO60566 1050 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-209ENST00000367257 MTMR3Q13615 1198 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 KSR2Q6VAB6 950 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 RUFY4Q6ZNE9 571 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 MAIP1Q8WWC4 291 aa10.02□□□□□ -0.81
SYNE1-209ENST00000367257 GEMIN8Q9NWZ8 242 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms