RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 SEPT12Q8IYM1 358 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 XAGE2Q96GT9 111 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 CNNM1Q9NRU3 951 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 TRPC5Q9UL62 973 aaPredicted RBP11.09□□□□□ -0.63
ATG4A-202ENST00000345734 SPEF2Q9C093 1822 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 CNTNAP4Q9C0A0 1308 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 MED23Q9ULK4 1368 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 PDE4CQ08493 712 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 PARP10Q53GL7 1025 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 PRPF40BQ6NWY9 871 aaKnown RBP11.09□□□□□ -0.63
ATG4A-202ENST00000345734 POTEEQ6S8J3 1075 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 NOL8Q76FK4 1167 aaKnown RBP11.09□□□□□ -0.63
ATG4A-202ENST00000345734 PCDHGC3Q9UN70 934 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 AKAP2Q9Y2D5 859 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 TAF1LQ8IZX4 1826 aa11.09□□□□□ -0.63
ATG4A-202ENST00000345734 HOXA2O43364 376 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 RNF40O75150 1001 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 IFIT1P09914 478 aaKnown RBP11.08□□□□□ -0.64
ATG4A-202ENST00000345734 USP17L8P0C7I0 530 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 SLFNL1Q499Z3 407 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 VARS2Q5ST30 1063 aaKnown RBP11.08□□□□□ -0.64
ATG4A-202ENST00000345734 CCDC97Q96F63 343 aaPredicted RBP11.08□□□□□ -0.64
ATG4A-202ENST00000345734 SEC62Q99442 399 aaKnown RBP11.08□□□□□ -0.64
ATG4A-202ENST00000345734 PAG1Q9NWQ8 432 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 CCNL1Q9UK58 526 aaPredicted RBP11.08□□□□□ -0.64
ATG4A-202ENST00000345734 LY75O60449 1722 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 LAMB2P55268 1798 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 SNPHO15079 494 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 DMRTA1Q5VZB9 504 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 CCDC129Q6ZRS4 1044 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 VGLL2Q8N8G2 317 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 KBTBD3Q8NAB2 608 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 MAP4K1Q92918 833 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 TMX3Q96JJ7 454 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 QTRT2Q9H974 415 aaKnown RBP11.08□□□□□ -0.64
ATG4A-202ENST00000345734 SEC31BQ9NQW1 1179 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 ZNF652Q9Y2D9 606 aa11.08□□□□□ -0.64
ATG4A-202ENST00000345734 RBM8AQ9Y5S9 174 aaKnown RBP11.08□□□□□ -0.64
ATG4A-202ENST00000345734 CASZ1Q86V15 1759 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 POM121CA8CG34 1229 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 PDIA4P13667 645 aaKnown RBP11.07□□□□□ -0.64
ATG4A-202ENST00000345734 CPA1P15085 419 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 GCGRP47871 477 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 NECTIN1Q15223 517 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 ATP2B3Q16720 1220 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 TTC39AQ5SRH9 613 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 GORABQ5T7V8 394 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 AMIGO3Q86WK7 504 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 ZGPATQ8N5A5 531 aaKnown RBP11.07□□□□□ -0.64
ATG4A-202ENST00000345734 SRP68Q9UHB9 627 aaKnown RBP11.07□□□□□ -0.64
ATG4A-202ENST00000345734 TAF1P21675 1872 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 AKAP11Q9UKA4 1901 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 SCN7AQ01118 1682 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 RFX7Q2KHR2 1363 aa11.07□□□□□ -0.64
ATG4A-202ENST00000345734 FDX1P10109 184 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 KCNJ4P48050 445 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 FGD1P98174 961 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 SCARF1Q14162 830 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 ADCK5Q3MIX3 580 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 CCDC158Q5M9N0 1113 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 RC3H1Q5TC82 1133 aaKnown RBP11.06□□□□□ -0.64
ATG4A-202ENST00000345734 CREB3L3Q68CJ9 461 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 CLEC4GQ6UXB4 293 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 BICDL1Q6ZP65 573 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 HELBQ8NG08 1087 aaPredicted RBP11.06□□□□□ -0.64
ATG4A-202ENST00000345734 KCNB2Q92953 911 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 PLSCR2Q9NRY7 297 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 LRP5O75197 1615 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 TAF5LO75529 589 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 RPS6KA4O75676 772 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 FKBP4Q02790 459 aaKnown RBP eCLIP11.06□□□□□ -0.64
ATG4A-202ENST00000345734 RAB3GAP1Q15042 981 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 ERFEQ4G0M1 354 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 USPL1Q5W0Q7 1092 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 TBC1D9BQ66K14 1250 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.06□□□□□ -0.64
ATG4A-202ENST00000345734 TNPO1Q92973 898 aaKnown RBP11.06□□□□□ -0.64
ATG4A-202ENST00000345734 BRWD3Q6RI45 1802 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 COL4A1P02462 1669 aa11.06□□□□□ -0.64
ATG4A-202ENST00000345734 MYO5AQ9Y4I1 1855 aaKnown RBP11.05□□□□□ -0.64
ATG4A-202ENST00000345734 SLC27A2O14975 620 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 PDE8BO95263 885 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 CASTP20810 708 aaKnown RBP11.05□□□□□ -0.64
ATG4A-202ENST00000345734 MCM2P49736 904 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 PI16Q6UXB8 463 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 JAKMIP1Q96N16 626 aaKnown RBP11.05□□□□□ -0.64
ATG4A-202ENST00000345734 TTC14Q96N46 770 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 HMX1Q9NP08 348 aaPredicted RBP11.05□□□□□ -0.64
ATG4A-202ENST00000345734 TAF6LQ9Y6J9 622 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 MYH7P12883 1935 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 SSFA2P28290 1259 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 COL9A3Q14050 684 aaPredicted RBP11.05□□□□□ -0.64
ATG4A-202ENST00000345734 CCDC152Q4G0S7 254 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 MCMDC2Q4G0Z9 681 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 OTUD5Q96G74 571 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 NARFQ9UHQ1 456 aa11.05□□□□□ -0.64
ATG4A-202ENST00000345734 SNAP23O00161 211 aa11.04□□□□□ -0.64
ATG4A-202ENST00000345734 MCM4P33991 863 aa11.04□□□□□ -0.64
ATG4A-202ENST00000345734 ZAP70P43403 619 aa11.04□□□□□ -0.64
ATG4A-202ENST00000345734 MCAMP43121 646 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms