RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RAPGEF1Q13905 1077 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 SPATS2LQ9NUQ6 558 aaKnown RBP14.37□□□□□ -0.11
USP47-202ENST00000339865 MIS18AQ9NYP9 233 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 STX8Q9UNK0 236 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 CAPN7Q9Y6W3 813 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 RIOK3O14730 519 aaKnown RBP14.37□□□□□ -0.11
USP47-202ENST00000339865 HIP1RO75146 1068 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 PPP1R9AQ9ULJ8 1098 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 CCT6AP40227 531 aaKnown RBP14.37□□□□□ -0.11
USP47-202ENST00000339865 A6NNZ2 444 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 PRIM1P49642 420 aaKnown RBP14.37□□□□□ -0.11
USP47-202ENST00000339865 TUBB8Q3ZCM7 444 aa14.37□□□□□ -0.11
USP47-202ENST00000339865 MPHOSPH6Q99547 160 aaKnown RBP14.37□□□□□ -0.11
USP47-202ENST00000339865 RPAP2Q8IXW5 612 aaPredicted RBP14.36□□□□□ -0.11
USP47-202ENST00000339865 NEK1Q96PY6 1258 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 STX17P56962 302 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 BCAP29Q9UHQ4 241 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 SPOPO43791 374 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 PDE4BQ07343 736 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 SPAG1Q07617 926 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 CCDC125Q86Z20 511 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 IFT20Q8IY31 132 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 Q9H521 79 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 LRRD1A4D1F6 860 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 CLTAP09496 248 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 NCBP1Q09161 790 aaKnown RBP14.36□□□□□ -0.11
USP47-202ENST00000339865 TUBB4AP04350 444 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 MCM10Q7L590 875 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 RNF8O76064 485 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 ZSCAN22P10073 491 aaPredicted RBP14.36□□□□□ -0.11
USP47-202ENST00000339865 IFIT5Q13325 482 aaKnown RBP14.36□□□□□ -0.11
USP47-202ENST00000339865 NXNQ6DKJ4 435 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 DACT1Q9NYF0 836 aa14.36□□□□□ -0.11
USP47-202ENST00000339865 C6orf229H3BNL8 230 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 SERPINB6P35237 376 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 ZBTB41Q5SVQ8 909 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 TTC30AQ86WT1 665 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 CALM1P0DP23 149 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 CALM2P0DP24 149 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 CALM3P0DP25 149 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 DHX58Q96C10 678 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 HAUS8Q9BT25 410 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 RB1CC1Q8TDY2 1594 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 MAFGO15525 162 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 DAPK3O43293 454 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 TYRO3Q06418 890 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 HEATR3Q7Z4Q2 680 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 NECAB1Q8N987 351 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 KRT15P19012 456 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 AMOTQ4VCS5 1084 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 DENND2CQ68D51 928 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 SRGAP1Q7Z6B7 1085 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 FAN1Q9Y2M0 1017 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 TBC1D8O95759 1140 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 SKOR1P84550 965 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 RILPL1Q5EBL4 403 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 MAP3K21Q5TCX8 1036 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 TTLL3Q9Y4R7 772 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 XRCC6P12956 609 aaKnown RBP eCLIP14.35□□□□□ -0.11
USP47-202ENST00000339865 SLC5A1P13866 664 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 IL1RL1Q01638 556 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 ZNF652Q9Y2D9 606 aa14.35□□□□□ -0.11
USP47-202ENST00000339865 STARD3NLO95772 234 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 RUFY4Q6ZNE9 571 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 RTL1A6NKG5 1358 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 ZRANB2O95218 330 aaKnown RBP eCLIP14.34□□□□□ -0.11
USP47-202ENST00000339865 KSR1Q8IVT5 923 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 ALG1Q9BT22 464 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 EFCC1Q9HA90 598 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 SCHIP1Q9P0W5 487 aaPredicted RBP14.34□□□□□ -0.11
USP47-202ENST00000339865 PHLDB3Q6NSJ2 640 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 SLF2Q8IX21 1173 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 IFIT1BQ5T764 474 aaKnown RBP14.34□□□□□ -0.11
USP47-202ENST00000339865 GABPB2Q8TAK5 448 aaPredicted RBP14.34□□□□□ -0.11
USP47-202ENST00000339865 TBC1D9Q6ZT07 1266 aa14.34□□□□□ -0.11
USP47-202ENST00000339865 SDCCAG3Q96C92 435 aa14.33□□□□□ -0.11
USP47-202ENST00000339865 EIF2AQ9BY44 585 aaKnown RBP14.33□□□□□ -0.11
USP47-202ENST00000339865 IRAK4Q9NWZ3 460 aa14.33□□□□□ -0.11
USP47-202ENST00000339865 SKIV2LQ15477 1246 aaKnown RBP14.33□□□□□ -0.12
USP47-202ENST00000339865 ZSCAN26Q16670 478 aa14.33□□□□□ -0.12
USP47-202ENST00000339865 CNGA4Q8IV77 575 aa14.33□□□□□ -0.12
USP47-202ENST00000339865 PPP4R1Q8TF05 950 aa14.33□□□□□ -0.12
USP47-202ENST00000339865 PLCB1Q9NQ66 1216 aa14.33□□□□□ -0.12
USP47-202ENST00000339865 LRRC23Q53EV4 343 aaPredicted RBP14.33□□□□□ -0.12
USP47-202ENST00000339865 RBSNQ9H1K0 784 aa14.33□□□□□ -0.12
USP47-202ENST00000339865 KRT3P12035 628 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 RNF34Q969K3 372 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 BAG5Q9UL15 447 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 GJA3Q9Y6H8 435 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 CDR2Q01850 454 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 PALMDQ9NP74 551 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 ASIC3Q9UHC3 531 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 LUC7L3O95232 432 aaKnown RBP14.32□□□□□ -0.12
USP47-202ENST00000339865 NCOA7Q8NI08 942 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 EVI5LQ96CN4 794 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 PSMB7Q99436 277 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 HDAC9Q9UKV0 1011 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 AKR1B15C9JRZ8 316 aaPredicted RBP14.32□□□□□ -0.12
USP47-202ENST00000339865 CCDC93Q567U6 631 aa14.32□□□□□ -0.12
USP47-202ENST00000339865 FAM71BQ8TC56 605 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms