RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 DAAM2Q86T65 1068 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 UBXN4Q92575 508 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 SDF4Q9BRK5 362 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 SH2B1Q9NRF2 756 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 POTEB3A0JP26 581 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 TNNT1P13805 278 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 FERP16591 822 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 PAFAH1B1P43034 410 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 HSP90AA5PQ58FG0 334 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 POTEBQ6S5H4 581 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 CTCFLQ8NI51 663 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 IPO4Q8TEX9 1081 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ABCD1P33897 745 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 PPFIA1Q13136 1202 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 CAMK4Q16566 473 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ZSCAN30Q86W11 494 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ADGRF5Q8IZF2 1346 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ZNF646O15015 1829 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ZNF831Q5JPB2 1677 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 AFF2P51816 1311 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 KRT18P05783 430 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ARID5AQ03989 594 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 NMIQ13287 307 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 CLASRPQ8N2M8 674 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 MKNK2Q9HBH9 465 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 RTEL1Q9NZ71 1219 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 SMC3Q9UQE7 1217 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 LUC7L2Q9Y383 392 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 MYH6P13533 1939 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ITPRIPQ8IWB1 547 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 IFNL2Q8IZJ0 200 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ZNF713Q8N859 430 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 GDAP1L1Q96MZ0 367 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ORC3Q9UBD5 711 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ALKQ9UM73 1620 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 KAT6AQ92794 2004 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 MYL6BP14649 208 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 AMPD3Q01432 767 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 PNMA8AQ86V59 439 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 MSANTD4Q8NCY6 345 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 LEO1Q8WVC0 666 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 RASSF4Q9H2L5 321 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 VCX3AQ9NNX9 186 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ALS2Q96Q42 1657 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 MYH8P13535 1937 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 ECM2O94769 699 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 NAP1L1P55209 391 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 MVPQ14764 893 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 R3HDM1Q15032 1099 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 PDILTQ8N807 584 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 CALR3Q96L12 384 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 VCX3BQ9H321 246 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 AKAP2Q9Y2D5 859 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 MAST3O60307 1309 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 PABPN1LA6NDY0 278 aaKnown RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 SSBP05455 408 aaKnown RBP eCLIP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 FKBP5Q13451 457 aaPredicted RBP3.74□□□□□ -1.81
CSMD3-202ENST00000339701 CCDC181Q5TID7 509 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 PPFIBP1Q86W92 1011 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 SLC10A4Q96EP9 437 aa3.74□□□□□ -1.81
CSMD3-202ENST00000339701 DCDC2CA8MYV0 355 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 IREB2P48200 963 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 MCTP2Q6DN12 878 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 KLHL10Q6JEL2 608 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 B4GALNT4Q76KP1 1039 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 CPSF2Q9P2I0 782 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 THRAP3Q9Y2W1 955 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 OSBPP22059 807 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 PPP2R5BQ15173 497 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 UNC5CLQ8IV45 518 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ZFYVE27Q5T4F4 411 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 CHAMP1Q96JM3 812 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 CSRNP2Q9H175 543 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 IPO5O00410 1097 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ACTN2P35609 894 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ARHGAP25P42331 645 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 APLP1P51693 650 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 KRT83P78385 493 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 SEMA3FQ13275 785 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 SPATA32Q96LK8 384 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 HAUS8Q9BT25 410 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 RNF181Q9P0P0 153 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 PSMA4P25789 261 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 SEPT14Q6ZU15 432 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 SEPT12Q8IYM1 358 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 CNTROBQ8N137 903 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 RAB3IL1Q8TBN0 382 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ALS2CR12Q96Q35 445 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 TRMT112Q9UI30 125 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 MTMR7Q9Y216 660 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 ATP10DQ9P241 1426 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 PLEKHG3A1L390 1219 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 MACROD2A1Z1Q3 448 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 PPIP5K2O43314 1243 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 NOL3O60936 208 aaKnown RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 PRKRIP1Q9H875 184 aaPredicted RBP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 CLGNO14967 610 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 GFAPP14136 432 aa3.73□□□□□ -1.81
CSMD3-202ENST00000339701 SFPQP23246 707 aaKnown RBP eCLIP3.73□□□□□ -1.81
CSMD3-202ENST00000339701 HSPA4P34932 840 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms