RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 UBA5Q9GZZ9 404 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 LCMT1Q9UIC8 334 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 DNMT1P26358 1616 aaKnown RBP18.21■□□□□ 0.51
NPHP3-201ENST00000337331 PRC1O43663 620 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 RUFY3Q7L099 469 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 TADA2BQ86TJ2 420 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 SPTLC2O15270 562 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 USO1O60763 962 aaKnown RBP18.21■□□□□ 0.51
NPHP3-201ENST00000337331 AFMP43652 599 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 SLC4A8Q2Y0W8 1093 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 FAM204AQ9H8W3 233 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 VAT1LQ9HCJ6 419 aa18.21■□□□□ 0.51
NPHP3-201ENST00000337331 MUM1L1Q5H9M0 696 aa18.21■□□□□ 0.5
NPHP3-201ENST00000337331 CRACR2BQ8N4Y2 399 aaPredicted RBP18.2■□□□□ 0.5
NPHP3-201ENST00000337331 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.2■□□□□ 0.5
NPHP3-201ENST00000337331 ABCC1P33527 1531 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 MAP3K5Q99683 1374 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 HSPA4P34932 840 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 MATR3P43243 847 aaKnown RBP eCLIP18.2■□□□□ 0.5
NPHP3-201ENST00000337331 PLA2G4AP47712 749 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 BRD3Q15059 726 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.2■□□□□ 0.5
NPHP3-201ENST00000337331 KDM5CP41229 1560 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 CTAGE9A4FU28 777 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 PIP4K2BP78356 416 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 DHX32Q7L7V1 743 aaKnown RBP18.2■□□□□ 0.5
NPHP3-201ENST00000337331 BCAS4Q8TDM0 211 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 TSG101Q99816 390 aa18.2■□□□□ 0.5
NPHP3-201ENST00000337331 BAG1Q99933 345 aaPredicted RBP18.2■□□□□ 0.5
NPHP3-201ENST00000337331 YTHDC2Q9H6S0 1430 aaKnown RBP18.2■□□□□ 0.5
NPHP3-201ENST00000337331 PTPDC1A2A3K4 754 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 CCDC175P0C221 793 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 KIF5BP33176 963 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 PPARDQ03181 441 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 TMEM266Q2M3C6 531 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 IMPACTQ9P2X3 320 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 STX8Q9UNK0 236 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 SNX14Q9Y5W7 946 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 KDM6BO15054 1643 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 PPP1R12BO60237 982 aaPredicted RBP18.19■□□□□ 0.5
NPHP3-201ENST00000337331 CCDC96Q2M329 555 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 PNMA6EA0A0J9YXQ4 647 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 TFCP2Q12800 502 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 AP1ARQ63HQ0 302 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 ZCRB1Q8TBF4 217 aaKnown RBP18.19■□□□□ 0.5
NPHP3-201ENST00000337331 CC2D1AQ6P1N0 951 aaPredicted RBP18.19■□□□□ 0.5
NPHP3-201ENST00000337331 CADPS2Q86UW7 1296 aa18.19■□□□□ 0.5
NPHP3-201ENST00000337331 RTN1Q16799 776 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 ANKRD18AQ8IVF6 992 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 A0A1B0GVL5 298 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 N4BP2L2Q92802 583 aaPredicted RBP18.18■□□□□ 0.5
NPHP3-201ENST00000337331 AK9Q5TCS8 1911 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 GOLGA6CA6NDK9 693 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 TULP2O00295 520 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 FGFR1OPO95684 399 aaKnown RBP18.18■□□□□ 0.5
NPHP3-201ENST00000337331 GOLGA6DP0CG33 693 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 PDE4BQ07343 736 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 SIRT2Q8IXJ6 389 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 GOLGA6AQ9NYA3 693 aa18.18■□□□□ 0.5
NPHP3-201ENST00000337331 GCP02774 474 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 DDX21Q9NR30 783 aaKnown RBP eCLIP18.17■□□□□ 0.5
NPHP3-201ENST00000337331 PTPRTO14522 1441 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 HOXC9P31274 260 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 RSRC1Q96IZ7 334 aaKnown RBP18.17■□□□□ 0.5
NPHP3-201ENST00000337331 ODF2LQ9ULJ1 636 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 SBNO2Q9Y2G9 1366 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 ADGRL2O95490 1459 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 PSDA5PKW4 1024 aaPredicted RBP18.17■□□□□ 0.5
NPHP3-201ENST00000337331 AP5Z1O43299 807 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 CYP7A1P22680 504 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 FANCCQ00597 558 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 CABLES1Q8TDN4 633 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 KAT14Q9H8E8 782 aa18.17■□□□□ 0.5
NPHP3-201ENST00000337331 KIF1CO43896 1103 aaKnown RBP18.16■□□□□ 0.5
NPHP3-201ENST00000337331 PPP1R1BQ9UD71 204 aaPredicted RBP18.16■□□□□ 0.5
NPHP3-201ENST00000337331 ABCC10Q5T3U5 1492 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 ECM2O94769 699 aaPredicted RBP18.16■□□□□ 0.5
NPHP3-201ENST00000337331 NBPF7P0C2Y1 421 aaPredicted RBP18.16■□□□□ 0.5
NPHP3-201ENST00000337331 CCDC121Q6ZUS5 278 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 C11orf57Q6ZUT1 292 aaPredicted RBP18.16■□□□□ 0.5
NPHP3-201ENST00000337331 KLHDC4Q8TBB5 520 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 RABGGTAQ92696 567 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 ESR2Q92731 530 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 KRT23Q9C075 422 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 FHOD1Q9Y613 1164 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 SLC4A4Q9Y6R1 1079 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 RTL1A6NKG5 1358 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 SGSM2O43147 1006 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 TIMM10P62072 90 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 VPS36Q86VN1 386 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 TMTC2Q8N394 836 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 CAPZA3Q96KX2 299 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 TRIM47Q96LD4 638 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 NEDD9Q14511 834 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 SEPT7Q16181 437 aaKnown RBP18.16■□□□□ 0.5
NPHP3-201ENST00000337331 CEP85LQ5SZL2 805 aa18.16■□□□□ 0.5
NPHP3-201ENST00000337331 WWC2Q6AWC2 1192 aa18.15■□□□□ 0.5
NPHP3-201ENST00000337331 B4GALNT4Q76KP1 1039 aa18.15■□□□□ 0.5
NPHP3-201ENST00000337331 CALML4Q96GE6 196 aa18.15■□□□□ 0.5
NPHP3-201ENST00000337331 RNF113AO15541 343 aaKnown RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms