RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 BCAMP50895 628 aa17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 CYB5R4Q7L1T6 521 aa17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 IGHMBP2P38935 993 aaKnown RBP17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 KCNQ4P56696 695 aa17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 INCENPQ9NQS7 918 aa17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 GJB4Q9NTQ9 266 aa17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 RCOR1Q9UKL0 485 aa17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLCNKA-201ENST00000331433 RREB1Q92766 1687 aa17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 CPLX1O14810 134 aa17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 MBD4O95243 580 aa17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 PIP4K2BP78356 416 aa17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 FAM200AQ8TCP9 573 aa17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 CHMP4CQ96CF2 233 aa17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 ORC3Q9UBD5 711 aaPredicted RBP17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 B4E1Z4 1266 aa17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 RBM43Q6ZSC3 357 aaKnown RBP17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 ZNF830Q96NB3 372 aaPredicted RBP17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 EPB41L4AQ9HCS5 686 aaPredicted RBP17.4■□□□□ 0.38
CLCNKA-201ENST00000331433 COL4A1P02462 1669 aa17.39■□□□□ 0.38
CLCNKA-201ENST00000331433 NEDD4P46934 1319 aa17.39■□□□□ 0.38
CLCNKA-201ENST00000331433 WDR19Q8NEZ3 1342 aa17.39■□□□□ 0.38
CLCNKA-201ENST00000331433 DHX16O60231 1041 aaKnown RBP17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 MAP3K12Q12852 859 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 BARGINQ6ZT62 677 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 C8orf76Q96K31 380 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 ZNF396Q96N95 335 aaPredicted RBP17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 ARMT1Q9H993 441 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 SENP2Q9HC62 589 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 ANGEL1Q9UNK9 670 aaKnown RBP17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 RXRAP19793 462 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 CHRNDQ07001 517 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 ANO6Q4KMQ2 910 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 LUZP1Q86V48 1076 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 GOLPH3LQ9H4A5 285 aa17.39■□□□□ 0.37
CLCNKA-201ENST00000331433 OFD1O75665 1012 aa17.38■□□□□ 0.37
CLCNKA-201ENST00000331433 FAM98CQ17RN3 349 aaKnown RBP17.38■□□□□ 0.37
CLCNKA-201ENST00000331433 CCAR1Q8IX12 1150 aaKnown RBP17.38■□□□□ 0.37
CLCNKA-201ENST00000331433 SH2B2O14492 632 aaPredicted RBP17.38■□□□□ 0.37
CLCNKA-201ENST00000331433 C3orf67Q6ZVT6 689 aa17.38■□□□□ 0.37
CLCNKA-201ENST00000331433 SMIM5Q71RC9 77 aa17.38■□□□□ 0.37
CLCNKA-201ENST00000331433 IQSEC3Q9UPP2 1182 aaPredicted RBP17.38■□□□□ 0.37
CLCNKA-201ENST00000331433 POLR3DP05423 398 aaPredicted RBP17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 ME1P48163 572 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 CTDSPL2Q05D32 466 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 IFNL3Q8IZI9 196 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 LINC00116Q8NCU8 138 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 FBXO18Q8NFZ0 1043 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 SMARCC1Q92922 1105 aaPredicted RBP17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 DOCK2Q92608 1830 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 PRKAB2O43741 272 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 NAPBQ9H115 298 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 CBX8Q9HC52 389 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 TAOK2Q9UL54 1235 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 ZNF652Q9Y2D9 606 aa17.37■□□□□ 0.37
CLCNKA-201ENST00000331433 RTL9Q8NET4 1388 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 WTIPA6NIX2 430 aaPredicted RBP17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 PATL2C9JE40 543 aaKnown RBP17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 ERFEQ4G0M1 354 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 ATL3Q6DD88 541 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 TTC12Q9H892 705 aaPredicted RBP17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 TACC3Q9Y6A5 838 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 METAP2P50579 478 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 SASS6Q6UVJ0 657 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 MICU3Q86XE3 530 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 CCDC144CPQ8IYA2 1237 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 LCORLQ8N3X6 602 aa17.36■□□□□ 0.37
CLCNKA-201ENST00000331433 ZMYM6O95789 1325 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 C4AP0C0L4 1744 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 C4BP0C0L5 1744 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 TAF1P21675 1872 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 GSG1L2A8MUP6 293 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 SNW1Q13573 536 aaKnown RBP17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 ALX1Q15699 326 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 APOA5Q6Q788 366 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 BICDL1Q6ZP65 573 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 PTF1AQ7RTS3 328 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 MIGA1Q8NAN2 632 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 AIFM3Q96NN9 605 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 DNAJC25Q9H1X3 360 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 CICQ96RK0 1608 aaPredicted RBP17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 LAMB2P55268 1798 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 KIF28PB7ZC32 967 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 IGDCC4Q8TDY8 1250 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 MYL10Q9BUA6 226 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 CLIC4Q9Y696 253 aa17.35■□□□□ 0.37
CLCNKA-201ENST00000331433 COL5A3P25940 1745 aaPredicted RBP17.34■□□□□ 0.37
CLCNKA-201ENST00000331433 CDC27P30260 824 aa17.34■□□□□ 0.37
CLCNKA-201ENST00000331433 CCDC73Q6ZRK6 1079 aa17.34■□□□□ 0.37
CLCNKA-201ENST00000331433 FSIP1Q8NA03 581 aa17.34■□□□□ 0.37
CLCNKA-201ENST00000331433 RTEL1Q9NZ71 1219 aa17.34■□□□□ 0.37
CLCNKA-201ENST00000331433 LRP2BPQ9P2M1 347 aa17.34■□□□□ 0.37
CLCNKA-201ENST00000331433 PCDHA7Q9UN72 937 aa17.34■□□□□ 0.37
CLCNKA-201ENST00000331433 NFXL1Q6ZNB6 911 aa17.33■□□□□ 0.37
CLCNKA-201ENST00000331433 STK11IPQ8N1F8 1099 aa17.33■□□□□ 0.37
CLCNKA-201ENST00000331433 SPC24Q8NBT2 197 aa17.33■□□□□ 0.37
CLCNKA-201ENST00000331433 PHKBQ93100 1093 aa17.33■□□□□ 0.37
CLCNKA-201ENST00000331433 CDC5LQ99459 802 aaKnown RBP17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms