RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 IRS4O14654 1257 aaPredicted RBP18.79■□□□□ 0.6
USHBP1-202ENST00000324554 ATL3Q6DD88 541 aa18.79■□□□□ 0.6
USHBP1-202ENST00000324554 MB21D2Q8IYB1 491 aaPredicted RBP18.79■□□□□ 0.6
USHBP1-202ENST00000324554 SMARCC1Q92922 1105 aaPredicted RBP18.79■□□□□ 0.6
USHBP1-202ENST00000324554 GOLPH3LQ9H4A5 285 aa18.79■□□□□ 0.6
USHBP1-202ENST00000324554 RIOK3O14730 519 aaKnown RBP18.79■□□□□ 0.6
USHBP1-202ENST00000324554 ITGA6P23229 1130 aa18.79■□□□□ 0.6
USHBP1-202ENST00000324554 METTL24Q5JXM2 366 aa18.79■□□□□ 0.6
USHBP1-202ENST00000324554 CCAR1Q8IX12 1150 aaKnown RBP18.79■□□□□ 0.6
USHBP1-202ENST00000324554 TTLL11Q8NHH1 800 aa18.79■□□□□ 0.6
USHBP1-202ENST00000324554 ZNF396Q96N95 335 aaPredicted RBP18.79■□□□□ 0.6
USHBP1-202ENST00000324554 GREM2Q9H772 168 aa18.79■□□□□ 0.6
USHBP1-202ENST00000324554 NUP98P52948 1817 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 MCAMP43121 646 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 SUSD4Q5VX71 490 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 ZSCAN25Q6NSZ9 544 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 C11orf57Q6ZUT1 292 aaPredicted RBP18.78■□□□□ 0.6
USHBP1-202ENST00000324554 BCL2L12Q9HB09 334 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 GPAA1O43292 621 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 PRC1O43663 620 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 LDHAL6AQ6ZMR3 332 aa18.78■□□□□ 0.6
USHBP1-202ENST00000324554 MYH7P12883 1935 aa18.77■□□□□ 0.6
USHBP1-202ENST00000324554 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.77■□□□□ 0.6
USHBP1-202ENST00000324554 ERVV-1B6SEH8 477 aa18.77■□□□□ 0.6
USHBP1-202ENST00000324554 CAMTA2O94983 1202 aa18.77■□□□□ 0.6
USHBP1-202ENST00000324554 SNW1Q13573 536 aaKnown RBP18.77■□□□□ 0.6
USHBP1-202ENST00000324554 IQCB1Q15051 598 aa18.77■□□□□ 0.6
USHBP1-202ENST00000324554 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.77■□□□□ 0.6
USHBP1-202ENST00000324554 SEPT12Q8IYM1 358 aa18.77■□□□□ 0.6
USHBP1-202ENST00000324554 ZNF34Q8IZ26 560 aa18.77■□□□□ 0.6
USHBP1-202ENST00000324554 CAVIN2O95810 425 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 ANTXR2P58335 489 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 CCDC144BQ3MJ40 725 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 CCDC144CPQ8IYA2 1237 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 AKAP11Q9UKA4 1901 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 A0A087WWV3 80 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 CTSWP56202 376 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 BICDL1Q6ZP65 573 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 NCOA7Q8NI08 942 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 QTRT2Q9H974 415 aaKnown RBP18.76■□□□□ 0.59
USHBP1-202ENST00000324554 CLIP2Q9UDT6 1046 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 HPS5Q9UPZ3 1129 aa18.76■□□□□ 0.59
USHBP1-202ENST00000324554 DDX60Q8IY21 1712 aaKnown RBP18.76■□□□□ 0.59
USHBP1-202ENST00000324554 KLF18A0A0U1RQI7 1052 aa18.75■□□□□ 0.59
USHBP1-202ENST00000324554 CTAGE5O15320 804 aa18.75■□□□□ 0.59
USHBP1-202ENST00000324554 VGLL2Q8N8G2 317 aa18.75■□□□□ 0.59
USHBP1-202ENST00000324554 ENGASEQ8NFI3 743 aa18.75■□□□□ 0.59
USHBP1-202ENST00000324554 CCDC94Q9BW85 323 aaPredicted RBP18.75■□□□□ 0.59
USHBP1-202ENST00000324554 NIP7Q9Y221 180 aaKnown RBP eCLIP18.75■□□□□ 0.59
USHBP1-202ENST00000324554 ZNF213O14771 459 aa18.75■□□□□ 0.59
USHBP1-202ENST00000324554 CHAF1AQ13111 956 aaPredicted RBP18.75■□□□□ 0.59
USHBP1-202ENST00000324554 CCDC73Q6ZRK6 1079 aa18.75■□□□□ 0.59
USHBP1-202ENST00000324554 CACTINQ8WUQ7 758 aaKnown RBP18.75■□□□□ 0.59
USHBP1-202ENST00000324554 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.75■□□□□ 0.59
USHBP1-202ENST00000324554 CNNM1Q9NRU3 951 aa18.75■□□□□ 0.59
USHBP1-202ENST00000324554 ANKRD18BA2A2Z9 1011 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 GOLGA8BA8MQT2 603 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 ADD2P35612 726 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 FAM160A1Q05DH4 1040 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 ZNF512BQ96KM6 892 aaPredicted RBP18.74■□□□□ 0.59
USHBP1-202ENST00000324554 ME1P48163 572 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 OTUD7BQ6GQQ9 843 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 RALYLQ86SE5 291 aaKnown RBP18.74■□□□□ 0.59
USHBP1-202ENST00000324554 AMIGO3Q86WK7 504 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 ANKRD36CQ5JPF3 1778 aa18.74■□□□□ 0.59
USHBP1-202ENST00000324554 DHX16O60231 1041 aaKnown RBP18.73■□□□□ 0.59
USHBP1-202ENST00000324554 C16orf45Q96MC5 204 aaPredicted RBP18.73■□□□□ 0.59
USHBP1-202ENST00000324554 MYH3P11055 1940 aa18.73■□□□□ 0.59
USHBP1-202ENST00000324554 WDR19Q8NEZ3 1342 aa18.73■□□□□ 0.59
USHBP1-202ENST00000324554 KINO60870 393 aaKnown RBP18.73■□□□□ 0.59
USHBP1-202ENST00000324554 C8orf76Q96K31 380 aa18.73■□□□□ 0.59
USHBP1-202ENST00000324554 NBPF3Q9H094 633 aa18.73■□□□□ 0.59
USHBP1-202ENST00000324554 RTEL1Q9NZ71 1219 aa18.73■□□□□ 0.59
USHBP1-202ENST00000324554 TRPC5Q9UL62 973 aaPredicted RBP18.73■□□□□ 0.59
USHBP1-202ENST00000324554 ATRNO75882 1429 aa18.73■□□□□ 0.59
USHBP1-202ENST00000324554 STX1AQ16623 288 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 SLC9C2Q5TAH2 1124 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 RAB11FIP4Q86YS3 637 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 FSIP1Q8NA03 581 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 ERCC4Q92889 916 aaPredicted RBP18.72■□□□□ 0.59
USHBP1-202ENST00000324554 CCNL1Q9UK58 526 aaPredicted RBP18.72■□□□□ 0.59
USHBP1-202ENST00000324554 PCDHA7Q9UN72 937 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 GOLGA6L19H0YKK7 550 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 PDE8BO95263 885 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 CDC25BP30305 580 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 SARM1Q6SZW1 724 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 FBXO18Q8NFZ0 1043 aa18.72■□□□□ 0.59
USHBP1-202ENST00000324554 PIH1D3Q9NQM4 214 aaKnown RBP18.72■□□□□ 0.59
USHBP1-202ENST00000324554 ORC3Q9UBD5 711 aaPredicted RBP18.72■□□□□ 0.59
USHBP1-202ENST00000324554 CTIFO43310 598 aaKnown RBP18.71■□□□□ 0.59
USHBP1-202ENST00000324554 ARID5BQ14865 1188 aa18.71■□□□□ 0.59
USHBP1-202ENST00000324554 TTF1Q15361 905 aaPredicted RBP18.71■□□□□ 0.59
USHBP1-202ENST00000324554 SRP68Q9UHB9 627 aaKnown RBP18.71■□□□□ 0.59
USHBP1-202ENST00000324554 PDE8AO60658 829 aa18.71■□□□□ 0.59
USHBP1-202ENST00000324554 DHX40Q8IX18 779 aaKnown RBP18.71■□□□□ 0.59
USHBP1-202ENST00000324554 LINC00301Q8NCQ3 95 aa18.71■□□□□ 0.59
USHBP1-202ENST00000324554 UTP14AQ9BVJ6 771 aaKnown RBP18.71■□□□□ 0.59
USHBP1-202ENST00000324554 DENND2AQ9ULE3 1009 aa18.71■□□□□ 0.59
USHBP1-202ENST00000324554 CPLX1O14810 134 aa18.7■□□□□ 0.58
USHBP1-202ENST00000324554 GNPATO15228 680 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms