RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 SPDL1Q96EA4 605 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 MAPK8IP1Q9UQF2 711 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 KLHL7Q8IXQ5 586 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 PCDHB15Q9Y5E8 787 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 ZNF75DP51815 510 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 JAKMIP2Q96AA8 810 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 MYH10P35580 1976 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 TIAM1Q13009 1591 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 LUC7L3O95232 432 aaKnown RBP9.79□□□□□ -0.84
USF3-201ENST00000316407 VPS16Q9H269 839 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 ATF3P18847 181 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 KCTD16Q68DU8 428 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 RAB3IPQ96QF0 476 aaPredicted RBP9.79□□□□□ -0.84
USF3-201ENST00000316407 TACC3Q9Y6A5 838 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 GPR161Q8N6U8 529 aaKnown RBP9.79□□□□□ -0.84
USF3-201ENST00000316407 RILPQ96NA2 401 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 CLSTN2Q9H4D0 955 aa9.79□□□□□ -0.84
USF3-201ENST00000316407 DHX29Q7Z478 1369 aaKnown RBP9.79□□□□□ -0.84
USF3-201ENST00000316407 MAP3K12Q12852 859 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 KRT71Q3SY84 523 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 TOM1L2Q6ZVM7 507 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 TAOK1Q7L7X3 1001 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 PLS1Q14651 629 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 CNPY4Q8N129 248 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 USHBP1Q8N6Y0 703 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 DDX41Q9UJV9 622 aaKnown RBP9.78□□□□□ -0.84
USF3-201ENST00000316407 TXNDC2Q86VQ3 553 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 RXRAP19793 462 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 NCOA7Q8NI08 942 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 CCDC26Q8TAB7 109 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 MAK16Q9BXY0 300 aaKnown RBP9.78□□□□□ -0.84
USF3-201ENST00000316407 SERPINB6P35237 376 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 DESI2Q9BSY9 194 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 RAD50Q92878 1312 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 SND1Q7KZF4 910 aaKnown RBP eCLIP9.78□□□□□ -0.84
USF3-201ENST00000316407 TBC1D8O95759 1140 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 TUBB4AP04350 444 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 SNX16P57768 344 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 C16orf71Q8IYS4 520 aaPredicted RBP9.78□□□□□ -0.84
USF3-201ENST00000316407 FAM212AQ96EL1 285 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 SEC31AO94979 1220 aaKnown RBP9.78□□□□□ -0.84
USF3-201ENST00000316407 KIAA1524Q8TCG1 905 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 ZNF215Q9UL58 517 aaPredicted RBP9.78□□□□□ -0.84
USF3-201ENST00000316407 IFIT5Q13325 482 aaKnown RBP9.78□□□□□ -0.84
USF3-201ENST00000316407 RASIP1Q5U651 963 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 KLHDC4Q8TBB5 520 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 LEO1Q8WVC0 666 aaPredicted RBP9.78□□□□□ -0.84
USF3-201ENST00000316407 AGTPBP1Q9UPW5 1226 aa9.78□□□□□ -0.84
USF3-201ENST00000316407 PTPN23Q9H3S7 1636 aa9.77□□□□□ -0.84
USF3-201ENST00000316407 ALDH1L2Q3SY69 923 aa9.77□□□□□ -0.84
USF3-201ENST00000316407 VEZTQ9HBM0 779 aa9.77□□□□□ -0.84
USF3-201ENST00000316407 KRT5P13647 590 aa9.77□□□□□ -0.84
USF3-201ENST00000316407 POLE2P56282 527 aa9.77□□□□□ -0.84
USF3-201ENST00000316407 KIF22Q14807 665 aa9.77□□□□□ -0.84
USF3-201ENST00000316407 APOBRQ0VD83 1088 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 CYP26C1Q6V0L0 522 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 RNF41Q9H4P4 317 aaPredicted RBP9.77□□□□□ -0.85
USF3-201ENST00000316407 ECHDC1Q9NTX5 307 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 ELP1O95163 1332 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 ANKRD42Q8N9B4 389 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 SMARCA4P51532 1647 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 SBNO2Q9Y2G9 1366 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 ACTN4O43707 911 aaKnown RBP9.77□□□□□ -0.85
USF3-201ENST00000316407 FAM135AQ9P2D6 1515 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 ANLNQ9NQW6 1124 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 ZC4H2Q9NQZ6 224 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 VWA3AA6NCI4 1184 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 ESYT1Q9BSJ8 1104 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 KAT14Q9H8E8 782 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 STX8Q9UNK0 236 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 CADPSQ9ULU8 1353 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 SPOPO43791 374 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 CPA1P15085 419 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 HHATQ5VTY9 493 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 GOLGA5Q8TBA6 731 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 CAMSAP2Q08AD1 1489 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 LRRD1A4D1F6 860 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 AK2P54819 239 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 IFT88Q13099 833 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 ZBTB17Q13105 803 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 NAA16Q6N069 864 aaPredicted RBP9.77□□□□□ -0.85
USF3-201ENST00000316407 UBE3BQ7Z3V4 1068 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 PPP1R42Q7Z4L9 355 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 PYM1Q9BRP8 204 aaKnown RBP9.77□□□□□ -0.85
USF3-201ENST00000316407 INTUQ9ULD6 942 aa9.77□□□□□ -0.85
USF3-201ENST00000316407 TATP17735 454 aaPredicted RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 KRT9P35527 623 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 MTX1Q13505 466 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 HMG20BQ9P0W2 317 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 CALM1P0DP23 149 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 CALM2P0DP24 149 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 CALM3P0DP25 149 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 PPFIA1Q13136 1202 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 ZNF444Q8N0Y2 327 aaPredicted RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 TRIM6Q9C030 488 aaPredicted RBP9.76□□□□□ -0.85
USF3-201ENST00000316407 FAM204AQ9H8W3 233 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 CAVIN4Q5BKX8 364 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 TCP11Q8WWU5 503 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 WDR70Q9NW82 654 aa9.76□□□□□ -0.85
USF3-201ENST00000316407 ZPR1O75312 459 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms