RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ZNF384Q8TF68 577 aa16.82■□□□□ 0.28
SS18-201ENST00000269137 ZC3H12CQ9C0D7 883 aaKnown RBP16.82■□□□□ 0.28
SS18-201ENST00000269137 ZMYM6O95789 1325 aa16.81■□□□□ 0.28
SS18-201ENST00000269137 PATL2C9JE40 543 aaKnown RBP16.81■□□□□ 0.28
SS18-201ENST00000269137 ZBTB7AO95365 584 aa16.81■□□□□ 0.28
SS18-201ENST00000269137 MECOMQ03112 1051 aa16.81■□□□□ 0.28
SS18-201ENST00000269137 EYA3Q99504 573 aa16.81■□□□□ 0.28
SS18-201ENST00000269137 RTFDC1Q9BY42 306 aaPredicted RBP16.81■□□□□ 0.28
SS18-201ENST00000269137 ALDH8A1Q9H2A2 487 aaPredicted RBP16.81■□□□□ 0.28
SS18-201ENST00000269137 CCDC88AQ3V6T2 1871 aa16.81■□□□□ 0.28
SS18-201ENST00000269137 FAM205AQ6ZU69 1335 aa16.81■□□□□ 0.28
SS18-201ENST00000269137 POLD1P28340 1107 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 IMMTQ16891 758 aaKnown RBP16.8■□□□□ 0.28
SS18-201ENST00000269137 BLOC1S2Q6QNY1 142 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 ADGRA1Q86SQ6 560 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 ARMT1Q9H993 441 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 PDRG1Q9NUG6 133 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 MAST2Q6P0Q8 1798 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 RPS6KB1P23443 525 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 PRDX5P30044 214 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 GRIPAP1Q4V328 841 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 TTLL5Q6EMB2 1281 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 LCORLQ8N3X6 602 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 TBC1D22AQ8WUA7 517 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 NEK1Q96PY6 1258 aa16.8■□□□□ 0.28
SS18-201ENST00000269137 SNED1Q8TER0 1413 aa16.79■□□□□ 0.28
SS18-201ENST00000269137 MAGEB6P1A0A0J9YX57 407 aa16.79■□□□□ 0.28
SS18-201ENST00000269137 LDHBP07195 334 aaKnown RBP16.79■□□□□ 0.28
SS18-201ENST00000269137 HMGB1P09429 215 aaKnown RBP16.79■□□□□ 0.28
SS18-201ENST00000269137 R3HDM1Q15032 1099 aaKnown RBP16.79■□□□□ 0.28
SS18-201ENST00000269137 TTLL6Q8N841 843 aa16.79■□□□□ 0.28
SS18-201ENST00000269137 TMX3Q96JJ7 454 aa16.79■□□□□ 0.28
SS18-201ENST00000269137 RIOK1Q9BRS2 568 aaKnown RBP16.79■□□□□ 0.28
SS18-201ENST00000269137 GSG1L2A8MUP6 293 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 RIMBP2O15034 1052 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 CPA1P15085 419 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 AK2P54819 239 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 STOX1Q6ZVD7 989 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 MIGA1Q8NAN2 632 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 JAG2Q9Y219 1238 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 KIAA1551Q9HCM1 1747 aa16.78■□□□□ 0.28
SS18-201ENST00000269137 E7EWF7 191 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 APPP05067 770 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 HSP90AA1P07900 732 aaKnown RBP16.77■□□□□ 0.28
SS18-201ENST00000269137 DPEP1P16444 411 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 KCNA3P22001 575 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 DDIT3P35638 169 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 TGFB2P61812 414 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 GSTO1P78417 241 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 DZIP1Q86YF9 867 aaKnown RBP16.77■□□□□ 0.28
SS18-201ENST00000269137 IFNL3Q8IZI9 196 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 SPRYD3Q8NCJ5 442 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 NACAP1Q9BZK3 213 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 SLKQ9H2G2 1235 aaPredicted RBP16.77■□□□□ 0.28
SS18-201ENST00000269137 LIMCH1Q9UPQ0 1083 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 ATF5Q9Y2D1 282 aaPredicted RBP16.77■□□□□ 0.28
SS18-201ENST00000269137 CHD4Q14839 1912 aa16.77■□□□□ 0.28
SS18-201ENST00000269137 A0A0G2JLW4 131 aa16.77■□□□□ 0.27
SS18-201ENST00000269137 ZNF213O14771 459 aa16.77■□□□□ 0.27
SS18-201ENST00000269137 CUL4AQ13619 759 aa16.77■□□□□ 0.27
SS18-201ENST00000269137 EPB41L4AQ9HCS5 686 aaPredicted RBP16.77■□□□□ 0.27
SS18-201ENST00000269137 SLC4A4Q9Y6R1 1079 aa16.77■□□□□ 0.27
SS18-201ENST00000269137 ANKRD1Q15327 319 aa16.76■□□□□ 0.27
SS18-201ENST00000269137 SUGT1Q9Y2Z0 365 aa16.76■□□□□ 0.27
SS18-201ENST00000269137 PRKAB2O43741 272 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 LDHCP07864 332 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 COL9A3Q14050 684 aaPredicted RBP16.75■□□□□ 0.27
SS18-201ENST00000269137 GIMAP6Q6P9H5 292 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 DHX32Q7L7V1 743 aaKnown RBP16.75■□□□□ 0.27
SS18-201ENST00000269137 PODNQ7Z5L7 613 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 SUPT20HQ8NEM7 779 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 SGIP1Q9BQI5 828 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 NAPBQ9H115 298 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 LAMA4Q16363 1823 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 HAND2P61296 217 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 GRIK5Q16478 980 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 MFSD14BQ5SR56 506 aa16.75■□□□□ 0.27
SS18-201ENST00000269137 INTS4Q96HW7 963 aaKnown RBP16.75■□□□□ 0.27
SS18-201ENST00000269137 ZSCAN31Q96LW9 406 aaPredicted RBP16.75■□□□□ 0.27
SS18-201ENST00000269137 CIZ1Q9ULV3 898 aaPredicted RBP16.75■□□□□ 0.27
SS18-201ENST00000269137 DYNLL1P63167 89 aaKnown RBP16.74■□□□□ 0.27
SS18-201ENST00000269137 GTF2IP78347 998 aa16.74■□□□□ 0.27
SS18-201ENST00000269137 EXOSC10Q01780 885 aaKnown RBP16.74■□□□□ 0.27
SS18-201ENST00000269137 RTKN2Q8IZC4 609 aa16.74■□□□□ 0.27
SS18-201ENST00000269137 CHMP5Q9NZZ3 219 aa16.74■□□□□ 0.27
SS18-201ENST00000269137 ZNF219Q9P2Y4 722 aaPredicted RBP16.74■□□□□ 0.27
SS18-201ENST00000269137 G3V3G9 751 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 C21orf2O43822 256 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 PPP4CP60510 307 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 DOK7Q18PE1 504 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 CCDC93Q567U6 631 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 DCAF8Q5TAQ9 597 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 CERS3Q8IU89 383 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 FAM163AQ96GL9 167 aaPredicted RBP16.73■□□□□ 0.27
SS18-201ENST00000269137 NBPF3Q9H094 633 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 CWC22Q9HCG8 908 aaKnown RBP16.73■□□□□ 0.27
SS18-201ENST00000269137 SH2B1Q9NRF2 756 aaPredicted RBP16.73■□□□□ 0.27
SS18-201ENST00000269137 TDO2P48775 406 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 KIAA2012Q0VF49 1180 aa16.73■□□□□ 0.27
SS18-201ENST00000269137 NOL8Q76FK4 1167 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms