RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 ZNF274Q96GC6 653 aaPredicted RBP15.15■□□□□ 0.02
CPSF6-201ENST00000266679 ZNF830Q96NB3 372 aaPredicted RBP15.15■□□□□ 0.02
CPSF6-201ENST00000266679 FTOQ9C0B1 505 aaKnown RBP eCLIP15.15■□□□□ 0.02
CPSF6-201ENST00000266679 KIF3AQ9Y496 699 aa15.15■□□□□ 0.02
CPSF6-201ENST00000266679 UBN2Q6ZU65 1347 aa15.14■□□□□ 0.01
CPSF6-201ENST00000266679 AP5Z1O43299 807 aa15.14■□□□□ 0.01
CPSF6-201ENST00000266679 MTFR1LQ9H019 292 aa15.14■□□□□ 0.01
CPSF6-201ENST00000266679 CFAP45Q9UL16 551 aa15.14■□□□□ 0.01
CPSF6-201ENST00000266679 CARMIL3Q8ND23 1372 aa15.14■□□□□ 0.01
CPSF6-201ENST00000266679 PRC1O43663 620 aa15.13■□□□□ 0.01
CPSF6-201ENST00000266679 PDE8AO60658 829 aa15.13■□□□□ 0.01
CPSF6-201ENST00000266679 VGLL2Q8N8G2 317 aa15.13■□□□□ 0.01
CPSF6-201ENST00000266679 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.13■□□□□ 0.013e-7■□□□□ 11.1
CPSF6-201ENST00000266679 TFCP2L1Q9NZI6 479 aa15.13■□□□□ 0.01
CPSF6-201ENST00000266679 KIAA2012Q0VF49 1180 aa15.13■□□□□ 0.01
CPSF6-201ENST00000266679 RAB11FIP4Q86YS3 637 aa15.13■□□□□ 0.01
CPSF6-201ENST00000266679 MB21D2Q8IYB1 491 aaPredicted RBP15.13■□□□□ 0.01
CPSF6-201ENST00000266679 SGIP1Q9BQI5 828 aa15.13■□□□□ 0.01
CPSF6-201ENST00000266679 PIH1D3Q9NQM4 214 aaKnown RBP15.13■□□□□ 0.01
CPSF6-201ENST00000266679 R3HCC1Q9Y3T6 440 aaKnown RBP15.13■□□□□ 0.01
CPSF6-201ENST00000266679 C4AP0C0L4 1744 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 C4BP0C0L5 1744 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 GOLGA8BA8MQT2 603 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 ADD1P35611 737 aaKnown RBP15.12■□□□□ 0.01
CPSF6-201ENST00000266679 ADD2P35612 726 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 FAM200AQ8TCP9 573 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 KLF18A0A0U1RQI7 1052 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 FAM177BA6PVY3 158 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 IDH1O75874 414 aaKnown RBP15.12■□□□□ 0.01
CPSF6-201ENST00000266679 TPM2P07951 284 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 PHKA1P46020 1223 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 ANTXR2P58335 489 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 ANO6Q4KMQ2 910 aa15.12■□□□□ 0.01
CPSF6-201ENST00000266679 RALYLQ86SE5 291 aaKnown RBP15.12■□□□□ 0.01
CPSF6-201ENST00000266679 HELBQ8NG08 1087 aaPredicted RBP15.12■□□□□ 0.01
CPSF6-201ENST00000266679 FHDC1Q9C0D6 1143 aaPredicted RBP15.12■□□□□ 0.01
CPSF6-201ENST00000266679 ZNF213O14771 459 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 PDE8BO95263 885 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 IL6STP40189 918 aaPredicted RBP15.11■□□□□ 0.01
CPSF6-201ENST00000266679 SLC9C2Q5TAH2 1124 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 ZSCAN25Q6NSZ9 544 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 NCOA7Q8NI08 942 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 USP28Q96RU2 1077 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 TTC12Q9H892 705 aaPredicted RBP15.11■□□□□ 0.01
CPSF6-201ENST00000266679 ERVV-1B6SEH8 477 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 FDPSP14324 419 aaKnown RBP15.11■□□□□ 0.01
CPSF6-201ENST00000266679 CCDC102BQ68D86 513 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 RBM43Q6ZSC3 357 aaKnown RBP15.11■□□□□ 0.01
CPSF6-201ENST00000266679 SMIM5Q71RC9 77 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 LUZP1Q86V48 1076 aa15.11■□□□□ 0.01
CPSF6-201ENST00000266679 COL24A1Q17RW2 1714 aa15.1■□□□□ 0.01
CPSF6-201ENST00000266679 TTF1Q15361 905 aaPredicted RBP15.1■□□□□ 0.01
CPSF6-201ENST00000266679 UBR3Q6ZT12 1888 aa15.1■□□□□ 0.01
CPSF6-201ENST00000266679 ZNF34Q8IZ26 560 aa15.1■□□□□ 0.01
CPSF6-201ENST00000266679 FBXL16Q8N461 479 aa15.1■□□□□ 0.01
CPSF6-201ENST00000266679 ZNF396Q96N95 335 aaPredicted RBP15.1■□□□□ 0.01
CPSF6-201ENST00000266679 CBX8Q9HC52 389 aa15.1■□□□□ 0.01
CPSF6-201ENST00000266679 EVCP57679 992 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 OTUD7BQ6GQQ9 843 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 SASS6Q6UVJ0 657 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 CCAR1Q8IX12 1150 aaKnown RBP15.09■□□□□ 0.01
CPSF6-201ENST00000266679 ZNF512BQ96KM6 892 aaPredicted RBP15.09■□□□□ 0.01
CPSF6-201ENST00000266679 NBPF3Q9H094 633 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 RCOR1Q9UKL0 485 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 WWC3Q9ULE0 1092 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 ZNF532Q9HCE3 1301 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 CHD4Q14839 1912 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 ECM29Q5VYK3 1845 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 DOCK2Q92608 1830 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 ARID4AP29374 1257 aaPredicted RBP15.09■□□□□ 0.01
CPSF6-201ENST00000266679 PUM3Q15397 648 aaKnown RBP15.09■□□□□ 0.01
CPSF6-201ENST00000266679 AMIGO3Q86WK7 504 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 TBC1D10CQ8IV04 446 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 SPC24Q8NBT2 197 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 CHMP4CQ96CF2 233 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 GOLPH3LQ9H4A5 285 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 DENND2AQ9ULE3 1009 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 HPS5Q9UPZ3 1129 aa15.09■□□□□ 0.01
CPSF6-201ENST00000266679 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.08■□□□□ 0
CPSF6-201ENST00000266679 APPP05067 770 aa15.08■□□□□ 0
CPSF6-201ENST00000266679 PDE6AP16499 860 aa15.08■□□□□ 0
CPSF6-201ENST00000266679 SUSD4Q5VX71 490 aa15.08■□□□□ 0
CPSF6-201ENST00000266679 MSL1Q68DK7 614 aa15.08■□□□□ 0
CPSF6-201ENST00000266679 UQCRFS1P1P0C7P4 283 aa15.08■□□□□ 0
CPSF6-201ENST00000266679 C17orf53Q8N3J3 647 aaPredicted RBP15.08■□□□□ 0
CPSF6-201ENST00000266679 DNAJC25Q9H1X3 360 aa15.08■□□□□ 0
CPSF6-201ENST00000266679 ORC3Q9UBD5 711 aaPredicted RBP15.08■□□□□ 0
CPSF6-201ENST00000266679 MROH5Q6ZUA9 1318 aa15.08■□□□□ 0
CPSF6-201ENST00000266679 CCDC73Q6ZRK6 1079 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 COL23A1Q86Y22 540 aaPredicted RBP15.07■□□□□ 0
CPSF6-201ENST00000266679 NKX2-3Q8TAU0 364 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 LPIN2Q92539 896 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 C8orf76Q96K31 380 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 SYT17Q9BSW7 474 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 CCDC87Q9NVE4 849 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 LAMB2P55268 1798 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 SNAP23O00161 211 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 CPLX1O14810 134 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 SLC5A1P13866 664 aa15.07■□□□□ 0
CPSF6-201ENST00000266679 FGFR2P21802 821 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms